rtnanos3 (rtnanos3)


Basic Information

Item Value
gene id rtnanos3
gene name rtnanos3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4269699 ~ 4271427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281422.1
TCAATTAATTGAACCCATCGCATTGTTCAGAAGTTTAGACACCGCTTTCTTTATTCTGGCACATTCTGATTGTCAGACACAAGTCTGTTGGGAATATGAACGCTATGATTTGTCAACTCCAACACCTACCGCGTTACATGGAGTCCGAAAACAGGAGATTCCAACCGTGGCGGGACTACATGAAGCTAGCGGACGCAGTGCGGGAGATGCAGTTAGGGAACTTCACATCAGAACCGTCAACCGTTGAGGGTCATGACTCCGGGATATGGTCGACCATGGTGGAATTTGAGGAGTTTCCGCCGCGAGCCTTGCTGTCACCGATAACACCTGTGCCGACACCACCCCTAGGGCACGAAATGAAACCCCTGGATTCCGAAATCGTCCCCTTGCATAAACACGCTGCTTTACGTCCGAGCAGCACCAAGGGTCCCGAGCCCCCTACAGCAGCGTCCAGATCCTCTGCGGGCACCCGGGGCCAGAAGGAGAGAATGAAGGCGACCTGCTCTAAGACGCCGGAGGAGGTGTCATCACCTGAGCGCAAGATCTGCAGCTTCTGCAAACACAACGGGGAGTCAGAGTCTGTGTATGGGTCCCACAGTCTCAAGAACCAGGATGGGGACGTGGTATGCCCGTACCTGCGGCAATATATCTGCCCTCTCTGTGGGGCCACCAAGGCCAAAGCCCACACCAAGCGCTTCTGTCCCCAAGTCGAAACCACCTACAGCTCGGTCTATGTCAAGTGATAGAAGCGCTAACTCTGGTCCAGGCCGTTACTGCGCTACCCTCTAGACCTACTAACATAGTCAACTTGTTGTTGCGAGATGGGTGGGACCAGAGCTAGAGAAGCGCTGGAGAGACTTCAGGCTGTTGTTTTGCAGACTTTCTTTAGCGTCTCTAGCGCACTGTATGCGGACAATTGTAAGAGGATTTACGAGTGGATATTTAGCTTAGACGCAGTTTGGAACAGGCTGACAAGTTTGTAGACTGTGTAATTTCCTGTTAGTCGTgtgatttttttattatttatttccttGACTTTTTCTCGTGTGTTTTCAACCATTGTCGCGTATTTCTATGTATTTATGACGTGTGATTATTTGCGTGCCCGTGCATTTATTTTCAACACATTTTGggtttgagtttttttttttttctttaaagtGGAAATGTCTCTGTCTGTGACCAAACTAACTGAGTATTTACATGTTGGTGTGAGATTTTGTAAAACCTCAACCTCTTAATGTGTCGCCTACTGTGTCGCCCTTACCAACAAACTCTCACTGCAGAATTAAACGTTTATCCCACGTTTCTCCCTGCTACATTGGGGAGGAAAAAACGGAAGTGTTGTCTTGTTTTGAGACTTGTTTTCCTGGCTTTAAAACGACATGCTCTAATCTAACTGTACATATGCAAGTCTACGGGCCTAAAATAACTATTAAAAGAACATTACCATTGACACCAAGACAACTTCTGTTTTATGACGTGGTGTGCTGAGCTACTTTGTATTTCTCATTTACCATGCTAGCTACTATTAAGAACCGTTATACTTTAATATATCTagaagtgtttttttattttaaatttgacTTTTCAACCTCGATGCATCTTACATTGGCTGTACAGGACTTTAATGTTAAGTCTAATCTCACTTTAAAGAACTGCGCTACCCCATGTTGAATAGTATGTTTGTTTATTATGATACATGTCttctataataataacaataata
>TU1297047
TGAGTATTTACATGTTGGTGTGAGATTTTGTAAAACCTCAACCTCTTAATGTGTCGCCTACTGTGTCGCCCTTACCAACAAACTCTCACTGCAGAATTAAACGTTTATCCCACGTTTCTCCCTGCTACATTGGGGAGGAAAAAACGGAAGTGTTGTCTTGTTTTGAGACTTGTTTTCCTGGCTTTAAAACGACATGCTCTAATCTAACTGTACATATGCAAGTCTACGGGCCTAAAATAACTATTAAAAGAACATTACCATTGACACCAAGACAACTTCTGTTTTATGACGTGGTGTGCTGAGCTACTTTGTATTTCTCATTTACCATGCTAGCTACTATTAAGAACCGTTATACTTTAATATATCTagaagtgtttttttattttaaatttgacTTTTCAACCTCGATGCATCTTACATTGGCTGTACAGGACTTTAATGTTAAGTCTAATCTCACTTTAAAGAACTGCGCTACCCCA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281422.1 False 1729 mRNA 0.45 1 4269699 4271427
TU1297047 True 479 lncRNA 0.37 1 4269757 4270235

Neighbor

gene id symbol gene type direction distance location
LOC110495140 LOC106592331 coding downstream 7123 4261402 ~ 4262576 (-)
LOC110495042 LOC106592322 coding downstream 14847 4254025 ~ 4254852 (-)
LOC118938533 LOC106564252 coding downstream 23926 4244317 ~ 4245773 (-)
LOC118938514 LOC106564252 coding downstream 31876 4236791 ~ 4237823 (-)
LOC110495043 LOC106564250 coding downstream 45061 4190237 ~ 4224638 (-)
LOC110493382 LOC106564272 coding upstream 454 4271881 ~ 4283197 (-)
LOC110485404 LOC106591939 coding upstream 22028 4293455 ~ 4312437 (-)
LOC118938151 LOC106592341 coding upstream 41695 4313122 ~ 4321279 (-)
LOC110519427 LOC106592376 coding upstream 54345 4325772 ~ 4337660 (-)
LOC118936518 LOC106606801 coding upstream 334927 4606354 ~ 4612954 (-)
G1138106 NA non-coding downstream 3023 4266474 ~ 4266676 (-)
G1138105 NA non-coding downstream 4364 4265052 ~ 4265335 (-)
G1138104 NA non-coding downstream 5152 4264320 ~ 4264547 (-)
G1138101 NA non-coding downstream 15815 4253667 ~ 4253884 (-)
G1138088 LOC106592176 non-coding downstream 42169 4226686 ~ 4227530 (-)
G1138008 NA non-coding upstream 19646 4291073 ~ 4291409 (-)
G1138116 NA non-coding upstream 34685 4306112 ~ 4306729 (-)
G1138117 NA non-coding upstream 44907 4316334 ~ 4316996 (-)
G1138140 NA non-coding upstream 96667 4368094 ~ 4368888 (-)
G1137672 LOC106595836 other downstream 503883 3765282 ~ 3765816 (-)
G1137666 NA other downstream 536399 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 737575 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 1081515 3161191 ~ 3197982 (-)
G1137174 NA other downstream 1139146 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 123318 4394745 ~ 4421260 (-)
G1138232 NA other upstream 348068 4619495 ~ 4620179 (-)
G1138568 NA other upstream 886738 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 929628 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 946264 5216411 ~ 5244441 (-)

Expression


Co-expression Network