LOC110519427 (LOC106592376)



Basic Information


Item Value
gene id LOC110519427
gene name LOC106592376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4325772 ~ 4337660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036939907.1
caaggagtggaatgagaGCTGAACAGACTGGGACCCAGACTAAGGTATTGTCCCTGGGAATATTGCACAATGTGACCTGCTTCCCCCCCTCCCAGATAACCAGTGTATAAATGCCTCGTTTACAGGTGGTTCCAGCAGTCAGCATCAACATTTGGTTGTGTTCCCCGTTTCTGCCCCTGTAGAAGTAACTAGTGTTGATGAGGATGATCCTGGTGGCTCTGCTGGTGCCTCTACTGGTTCTGTCCAGCGCTGGACATACCTCAGGTACGATTGTCACCAGCTGCGAGGTGTGTCACGAACAAGCCGTCTGCCGCACCTTCGCCATGGCAGGTGACATCACATGCACCTGTAAGAAGGGCTTCTCCGGAGACGGCCTCATCTGTTTACCTGGCCACACCGCCGCCGCCGACCACCACGCCCCTCGCCGTGTCCGCCGCTCCTACCCCACCTCCAACACCAACCTTGCCCATGTCCGGTTCAGCTGCGGCTTCAACGAGTGCGCCGACGGGGAGGACTGCATCACGGTCGACGGCATCCAGCAGTGCTCCAACCCCTGTAAGATCTACACGGTCCTGAACGACGCCTGGCGTTCCACCAACAACCACGTGGGCAACAAGCACTGTGACCGCAACGTCCGCTGGGACGGCTATTACCGCATGTTCATCGGCAACCAGAGCGTGTCCATGCCGGACAAGTGCGTGGATTCCTTCAAGTGCGGCACCCAGGCTCCCTTGTGGCTGGCGTTTCCTCCCCCCCAGCAAGTGGATGAAATTGTCCAGAGTGCAGTGTGCGCCAGCTTCAATGGGGACTGCTGCTGGGTGCAGTCTCAGCCCATCCACGTCAAGGCATGCCCTGGGAACTACTTTGTGTACAAGTTCGTCATGCCTCCCGGGTGCTACTTCGCCTATTGTGCATATGTGTCAGCTCCCACCACAACACCAAAACCAgtcacaacaacaaccacaacaacaaccaccacaacaacaacaaccacaacaacaaaagcCCCTGTAAAGGTCAACACGACAACACAAACCCCTGTAAAGGTCACGAAGACAACAAATGCACCTGTAaaagacaccacaacaacacaaacacctgTTAAGATCACCATGACAACACAAACACCTATTAAGATCACCATGACAACACAAACACCTATTAAGATCACCACGACAACACAAACATCCATAAATATCACCACTACGACAAAATCACCAGTAGATGTTGTCACCTCGACAAAATCACCAGTAGATGTTGTCACCTCGACAAAAACACCAGTAGACAACAATcgcaccacaacaacaacacagtcacagGTTGCCACGACTACGCCAAAAGCAATGTGTGGTGCctgcagagagggggagacctGCGTGAGCACCAATGGGGTCACTTGGCGGTGTGAGAGGCCAGatcAGCCTGTTTTGCTGCACCCAGAGGTAGTGTGTGGGCGGAGCCTGGTACAGGTGGGTCTCAACAGGACTAACCTCGAGGCCGCTGGTCTGGACGCCACCACCGCTAACCTGGCCGACCCCTGGTGTAACGCTCACGAAGAGCGTGGCGGCATGGTATGGTACCAGGTGGAGCGCAAGGAGGGCGCCTGCGGAAACACTCTGGAGACAAACGGAACTGACGCCATCTTTTCCAACAGTTTATTCATCTACCACGTTCCCGACGTGTCCTTCAGCCGACCCGTGAGCGTGCCTTTCTCCTGTGCCTACCCTCTGGAATCAGAGACCAGCCTGGATGTGGCCATCAAACCCTACCTGTCGCTGAAGGGTTCCAGAGTCGGTAAGGGCTCCAGAGTGGGCTCCAACATGACTCTGTACCACAGCGACGACTTCACAAAGGCTTACCCAGCGGGCGGAGTCACCTTGCCGGTGGGTTCCGTGCTGCACGTGGGCGTGTCCGTAGAGGAGTCCGAGACGGAGCGTTTCGTGGTCGTTCTGGAGGACTGCTATGCCACGCAATCCCCCGACCCTAAAGACATCATGCGATACTACATCATTCAGAACAAATGTCCGACTGAATTCCGTCaggtgagggtggaggagagCGGCTCGTCTCTCAGGGCTCGCTTCTCTGCTCTGCTGTTCCTGTACCAGGGGGACTACCGGGACGTCTTCCTGCACTGCAGACTCAGCCTGTGTGACCAGAGGAGCTCCTCCTGCACTCCAatgtGCACCAAAAGGAAATACCGCTCTGTCACCCCCTCTGTCCCCCTCGAACCCCTCACCATCGGACCAATCACCTGGTCCCAAAATGAAGATTGAACTTGTCATGCTTCCTGTATCCTAAACAATGAATCCAGTTATCTAAATGATTAATGTAAAGTTCATAAACCTATCTCACCTATACATCATTTATGTCCTAAACCAAGCCAGTTCATATTTAATATCTTTCATACATCCAGTtacaaataattatatttttctTACGACTAGGATAATTGGGAAAACATTTCTATTTGAACCAACACAATTTCATTGTTGAACCTTTAACTAAGGCTTGAGGCCAGAAAGTGTATGTGCTGGCCACTAATGTTTGTAACGTGAAAATAAATGGACATCTAGTTGTGATTATATCAACACAAACATCTCCTTCTAGTTTAAACTGCAGCTATAAAATCATTTCATCCTATTGCTCT

Function


NR:

description
PREDICTED: pancreatic secretory granule membrane major glycoprotein GP2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036939907.1 True 2650 mRNA 0.52 10 4325772 4337660

Neighbor


gene id symbol gene type direction distance location
LOC118938151 LOC106592341 coding downstream 4493 4313122 ~ 4321279 (-)
LOC110485404 LOC106591939 coding downstream 13335 4293455 ~ 4312437 (-)
LOC110493382 LOC106564272 coding downstream 42575 4271881 ~ 4283197 (-)
rtnanos3 rtnanos3 coding downstream 54345 4269699 ~ 4271427 (-)
LOC110495140 LOC106592331 coding downstream 63196 4261402 ~ 4262576 (-)
LOC118936518 LOC106606801 coding upstream 268694 4606354 ~ 4612954 (-)
LOC118938535 LOC106591275 coding upstream 282562 4620222 ~ 4622987 (-)
LOC118938536 NA coding upstream 399553 4737213 ~ 4741711 (-)
LOC118938155 LOC106564258 coding upstream 417418 4755078 ~ 4767260 (-)
LOC118936519 LOC106564260 coding upstream 433019 4770679 ~ 4796554 (-)
G1138117 NA non-coding downstream 8776 4316334 ~ 4316996 (-)
G1138116 NA non-coding downstream 19043 4306112 ~ 4306729 (-)
G1138008 NA non-coding downstream 34363 4291073 ~ 4291409 (-)
G1138140 NA non-coding upstream 30434 4368094 ~ 4368888 (-)
G1138150 NA non-coding upstream 47788 4385448 ~ 4435108 (-)
G1138151 LOC106606801 non-coding upstream 57861 4394745 ~ 4421260 (-)
G1138166 NA non-coding upstream 81502 4419162 ~ 4419956 (-)
G1138152 NA non-coding upstream 89729 4427389 ~ 4434767 (-)
G1137672 LOC106595836 other downstream 559956 3765282 ~ 3765816 (-)
G1137666 NA other downstream 592472 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 793648 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 1137588 3161191 ~ 3197982 (-)
G1137174 NA other downstream 1195219 3129613 ~ 3130553 (-)
G1138232 NA other upstream 281835 4619495 ~ 4620179 (-)
G1138568 NA other upstream 820505 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 863395 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 880031 5216411 ~ 5244441 (-)

Expression



Co-expression Network