LOC118936518 (LOC106606801)


Basic Information

Item Value
gene id LOC118936518
gene name LOC106606801
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4606354 ~ 4612954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939916.1
ATGAGGATCCTGCTGAtagtcatcctcctctccttcatgacAGGTTGTTTGAGCTCCTTTACAGTGACAGGATACTCTGGAGGAACTGTcatcatctactgtcattattccACAGAAGAAAGAAGTAATGAGAAATATTTATGCGTGAGGCAGTATAGTTTGAGTTATGAGGATCAAATCAGAACTGTATTGAATAACACCTGGAAGCACAGTGGTAGATTCTCCCTGTATGACAACACTAGAGGAAACTACTTCAAGGTGATGATCAGACAACTGACCAGACAAGATGAAGGGACCTACTGGTGTGGAGTGGACCAACCTATTATACCTGACAGTTATACCAAGGTAGAGCTGGATGTGAAGAAGGATGACTGCTGTGAGAAGTCAGTCACAGAGACGGCCTTTCTGGGAGGAGAAGCTACCATCAGATGTAACTATCCAGAGGACCATGAGGACAACATCAAGTATTTCTGCAAGGAAGACAGTGAATCTGACTGTGAATACCAGATATCAGGTACATATAATGAACAACTAGGAAGATATTCTCTTTctaagagaagaagagagagattcTCCACAGTGACCATCAGTGACCTGACTGAAGATGATACTGGGACCTACTGGTGTGGAGTAGAAACCAGCAGGACAGAACAACGTTACATTACACTGATCACACAGGTGAAGCTGGATGTTATAAATTGGAGGGATGTCAAACCAATCAATGTGACTGAGCAGGTTGGGGAGACTGCCAAGCTCACTTGTAAATATCCAGCAGACCACAAGAAGAATGAGAAGTTCTTCTGTAAAGGGGACAGTCCTTTAACCTGCGAAGATAAAGTAACAGCTACAAAACCTAACATCATCATAAGGAATAAGAGGTTTTCTCTGAGGGACAACAGTGAGAAGACCAACTTCACTGTTCACATCAAGATGATGAGACCAGAGGATTCTGGGACATACTGGTGTGGATCTGATAGAAGATGGAGACCTGCAGACTCCACTAGATTTATCCTCTCTGTGGTGGCACCAACTACCACCATCATGAAAACCAAAACTACAGCCCCACCCACAACCACCTTCCTCTCACTAtcttcaccaccatcaccatcatcatcatcaccatcatcatcattatcaccaGCATCATCACTCAACGGATCTGgtacCTCCGTGTTCATCATGGTGTCTGTTAGTCTGGTAGTGTTACTGCTGGTGATCAGCCTGATCATAGTCTATAGATGGAAATACAACAAGGTCACagGATTTGTTTCttcaacacacagagtgagtccagaCACAGGAAACAAAGAAGGGggttgtcatggtgatggtGACTATGAAGAGATAATGGAGCGCGCCCCAAGGTCAGACTCGGGCGCTGCGACCTCCACCATCTACACCACCGTCAACTTACCCACAAGCCACTCTGACTCTCCCCACTACGCCAGCGTCAACTTCCACAAGAACCCCAGTAGCTCCAACGAAGCCACTGACACCATTACTAAAGAGGGCAGATGCCCCAATGAAGCCACCGCCTCCATTGCAAAAGAGGGCACGTCATCATGTGACTATGCTACTGTGAACTTTGGTCAAAGCCCAGCCAGCCTACTCTACTGTCATCCACACAGCTCCTCTGAGGCTCCTCCCATATACTCCACAATCAGCAAACCCAGAGACACCTGAGTCAATGGCAACCAATCAcaagatacatacacacactggcgACCAATCACAAGagatatatttctctctctctctctctctctctctctctctctctctctctctctctc

Function

NR:

description
polymeric immunoglobulin receptor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939916.1 True 1793 mRNA 0.46 8 4606354 4612954

Neighbor

gene id symbol gene type direction distance location
LOC110519427 LOC106592376 coding downstream 268694 4325772 ~ 4337660 (-)
LOC118938151 LOC106592341 coding downstream 285075 4313122 ~ 4321279 (-)
LOC110485404 LOC106591939 coding downstream 293917 4293455 ~ 4312437 (-)
LOC110493382 LOC106564272 coding downstream 323157 4271881 ~ 4283197 (-)
rtnanos3 rtnanos3 coding downstream 334927 4269699 ~ 4271427 (-)
LOC118938535 LOC106591275 coding upstream 7268 4620222 ~ 4622987 (-)
LOC118938536 NA coding upstream 124259 4737213 ~ 4741711 (-)
LOC118938155 LOC106564258 coding upstream 142124 4755078 ~ 4767260 (-)
LOC118936519 LOC106564260 coding upstream 157725 4770679 ~ 4796554 (-)
LOC110493400 as1la coding upstream 184805 4797759 ~ 4807623 (-)
G1138225 NA non-coding downstream 4038 4601829 ~ 4602316 (-)
G1138221 NA non-coding downstream 18163 4587501 ~ 4588191 (-)
G1138186 NA non-coding downstream 106866 4498658 ~ 4499488 (-)
G1138176 NA non-coding downstream 164242 4441797 ~ 4442112 (-)
G1138150 NA non-coding downstream 171246 4385448 ~ 4435108 (-)
G1138232 NA non-coding upstream 6541 4619495 ~ 4620179 (-)
G1138234 NA non-coding upstream 12849 4625803 ~ 4626333 (-)
G1138236 NA non-coding upstream 14758 4627712 ~ 4630863 (-)
G1138309 NA non-coding upstream 124541 4737495 ~ 4738362 (-)
G1138315 LOC100194703 non-coding upstream 134763 4747717 ~ 4750557 (-)
G1138151 LOC106606801 other downstream 185094 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 840538 3765282 ~ 3765816 (-)
G1137666 NA other downstream 873054 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1074230 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 1418170 3161191 ~ 3197982 (-)
G1138568 NA other upstream 545211 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 588101 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 604737 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 1058506 5671437 ~ 5678473 (-)

Expression


Co-expression Network