LOC118936519 (LOC106564260)


Basic Information

Item Value
gene id LOC118936519
gene name LOC106564260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4770679 ~ 4796554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939919.1
ACGGACGGTAATGATCCAATCTGAGCACTTTACTAGTTTGACATACTGACAGGTGGCCAATCAGTGTCCTTCACTCCGTTATCAGTCGGGCTGGACTCAGCCAATGGGCTCTATGGATGGGCCTAGATCGTCTGTAGGCTGTAGTCGGTCACTCGGCTTGCTTCACACCGAAAGCTACAGTAGGCTATGTTGATTCTGGTGATTTCCCGACCTCATCGGGTTCGGTAAAACGACATCCTCGGAGCCGGGTTCGGGAAAGGAAAGGGGACTAGGTATCCGGCTCGGAGAGTGGCCACCTTGCACGGTGCGAAAACGGGGTATTTGCGCTGGGAAGAGGCGTGGGGCCTCGATCGGCGGGGGCTGCACGGAGGGACAGGCGAACCGACCGAGTCGGGCTGGATGCGCTGGACTCGGCCCGGAGCGCTGCGGTTCCAGCAAAGCACCATACCACAGCCCAAGACAGAAAGACGGAGACACGGACGTCGCTGTCTTCATTCCGGACTATAACACCATTTATTATTGTTATAACGGTTCTATACTGTAGAGGATATCAGGTGAGCTCACTGACAGTCTAGACTGCAGCTGTCAAGCTATTTCAGTCCGGACCGACTGGTTTTGGGAGAACGAACGGACCGACTGCTGGACTCAGCTGTGACCGGGTCCTGGAGAGTCCAGGGCGGGTTGTGGAGCTCGGATCGCCCGCTGACGGCCTGCCATCATGGGCAACGTGCCCACGGCCAAGAAGGGGAGCGAGATGGAGAGTGTGAAGGAGTTCCTGGCTAAAGCCAAAGAGGACTTTCTCAAGAAGTGGGAGAACCCTGAACAGAACACAGCGAGTCTGGATCAGTTTGAGCGGTTAAAAACTCTGGGTACGGGTTCGTTTGGCCGCGTCATGCTGGTCAAGCACAAAGAGACCGGGCAACACTTTGCCATGAAGATCCTCAACAAGCAGAAGgTTGTGAAGCTGAAACAGATAGAACATACTCTGAATGAGAAGCGTATTCTAACGGCTGTCAGCTTCCCTTTCCTGGTACAAGTAGAGTTCTCCTTCAAGGACAACACTAACCTGTACATGGTGATGGAGTATGTACCTGGTGGAGAGATGTTCTCTCATCTACGACGAATCGGCAGGTTCAGtGAGCCTCATGCTCGGTTCTACGCGGCTCAGATCGTTCTGACCTTTGAGTACCTGCACGCCCTGGACCTCATCTACCGAGACCTGAAACCGGAGAACCTTCTCATAGACCAGCAGGGCTACATACAGgtgacaGATTTTGGTTTTGCTAAGCGTGTGAAAGGTCGAACCTGGACACTGTGTGGAACCCCAGAGTACCTGGCCCCAGAGATCATCCTCAGCAAGgggTATAACAAGGCGGTAGACTGGTGGGCGTTGGGTGTGTTGGTCTATGAGATGGCAGCCGGTTATCCTCCCTTCTTCGCTGACCAGCCCATACAAATTTATGAAAAGATCGTCTCTGGGAAGgtgCGTTTTCCCTCCCACTTCAGCTCTGACCTGAAGGATCTGTTGAGGAATCTACTACAGGTGGACCTGACCAAGCGCTATGGCAACCTGAAGAACGGCGTCAACGACATCAAGGGACACAAGTGGTTCGCCACCACTGATTGGATCGCAGTATACCAGAGAAAGgtggaggCCCCGTTCGTTCCTAAGTTCAAAGGCCCAGGTGACACCAGCAACTTTGAGGAGTACGAAGAGGAGGAGATCAGAGTCTCCATCAGTGAACAGTGTGCCAAGGAGTTCACTGACTTCTAGAcccgaccagagagagagggattgaaggaagaagatagagaaggagagggaagaaaggagagggagagggagaaggaaggagagagagatggcgaaggaaggaaggaaggaaggaaggaaggaag

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit alpha-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939919.1 True 1899 mRNA 0.53 10 4770679 4796554

Neighbor

gene id symbol gene type direction distance location
LOC118938155 LOC106564258 coding downstream 3419 4755078 ~ 4767260 (-)
LOC118938536 NA coding downstream 28968 4737213 ~ 4741711 (-)
LOC118938535 LOC106591275 coding downstream 147692 4620222 ~ 4622987 (-)
LOC118936518 LOC106606801 coding downstream 157725 4606354 ~ 4612954 (-)
LOC110519427 LOC106592376 coding downstream 433019 4325772 ~ 4337660 (-)
LOC110493400 as1la coding upstream 1205 4797759 ~ 4807623 (-)
LOC110510582 LOC106592158 coding upstream 18191 4814745 ~ 4838008 (-)
gcgrb LOC106591591 coding upstream 146575 4943129 ~ 5000791 (-)
LOC110513279 LOC105029740 coding upstream 231524 5028078 ~ 5055105 (-)
LOC110513280 LOC106564244 coding upstream 261897 5058451 ~ 5061519 (-)
G1138316 NA non-coding downstream 44 4767922 ~ 4770635 (-)
G1138320 NA non-coding downstream 12520 4755712 ~ 4758159 (-)
G1138315 LOC100194703 non-coding downstream 20122 4747717 ~ 4750557 (-)
G1138309 NA non-coding downstream 32317 4737495 ~ 4738362 (-)
G1138236 NA non-coding downstream 139816 4627712 ~ 4630863 (-)
G1138331 NA non-coding upstream 8953 4805507 ~ 4805954 (-)
G1138340 NA non-coding upstream 27975 4824529 ~ 4825246 (-)
G1138362 NA non-coding upstream 67753 4864307 ~ 4865332 (-)
G1138364 NA non-coding upstream 70438 4866992 ~ 4868323 (-)
G1138542 NA non-coding upstream 143131 4939685 ~ 4940698 (-)
G1138232 NA other downstream 150815 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 349419 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1004863 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1037379 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1238555 3521685 ~ 3532141 (-)
G1138568 NA other upstream 361611 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 404501 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 421137 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 874906 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 1248303 6044857 ~ 6058622 (-)

Expression


Co-expression Network