LOC110493400 (as1la)


Basic Information

Item Value
gene id LOC110493400
gene name as1la
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4797759 ~ 4807623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939921.1
ccggaagagagaagaagaaacgcTGCTGGATTTCGTGACGTTACGAGAACCATTTCCGAACACACTGGCGGGAGTGTGAATGTTATCCTCTAGCTACAAAATAACCGAGAACTTCAAACAAAACACCTGCCAAAGCAAGcttttgtttaatttattttgaAAACGAATCTAGCGCCAAGCAGGTGTTATATTGCAAGCAATTGAAATTGACTAAGTTTGCAGGAGAGAAGACGGTAACAACCATCAGAAGACGCCACACACGTCTCTTTCTTTAGTCAAAGAGACTGAATTGTTTAACGTTGGCTAGTTTACTATTTTCCGTCCTGCCTTTATCTGCAACGTTAAGGGAGATAAACGAGCTAAATTCGACTAATTTTCTAATTATTAATCTGCTACGCTTTCAAGACTACTGAAAATAAATGGCTAAAGTTCAAGTGTTGAATGTCGCTGTGCTGGACAACCCAAGTCCTTTTGGGAATCCGTTTCAGTTCGAGATTACATTCGAGTGCATGGAGGATTTACCGGAGGacctGGAGTGGAAGATCATCTATGTGGGCTCAGCAGAGAGTGAGGAGTATGATCAGACTCTGGACTCAGTTCTGGTCGGACCGGTACCAGCAGGCAGACACATGTTCGTGTTCCAGgcGGATGCCCCCAACACCGGGCTGATTCCTGAGAGTGATGCTGTGGGGGTAACCGTGGCGCTCATCACCTGCACCTACAACGGACAGGAGTTCATCCGTATCGGTTACTATGTCAACAATGAATACACCGACCCAGAGCTCAGAGAGAACCCACCGGTCAAACCAGACTACACACAGctgcaGAGGAACATCCTGGCCTCTAACCCCCGTGTGACCCGGTTCCATATCAACTGGGACGGCTGTTCAGACAAGATGGAGGACAGTGAGAACGTAGACCCCTCCCccaacagcagcagtagcagcagcatggtGCCCTCCTCCTGTTTAGCTGGCAAGGCGTTACCTGTAGGACTGCTGTCTGGTAACTCGATGGACTGTCTGTAGAACACAGCCACCCCTCCAGCATTGCCTTGCCACGTTCTACTCCAGCAGTCGCCAGCAGTCTTTGGCAGGAAGGTTGAGTCACTTAATATAAACCAGCTGTAGGGTGTACGGTCTCCCTCCTTCACACAGCaacacctccctctgtctccactggcactggcaccctattccctccatagtgcactacttttttaaaCAGGACCCTCTgctccaatgtagtgcactatcaCAGAACAGGGTGCCATGTCAGACTCCTGATCCAAACAGTCCTGTTGTGTGTCTTCTTGTTTTAAAACCTAACTTCACACCTGGACTGGTTTCCATAGCAACACAGCTAAAGCTCAGGCCCTGCTTCAATACTGTAGAAATGCGTCCCTGTTTCCTTGAGGTGAGCAGGGAACCTGGAAGTGATTTGTATCAGTGGCAACAAGGTGACCACACTATTACTTCCACCTGTACAACCAATCCCCGATCTGGGATTACTTCCACCTGTCCAACCAATCCCTGATCTGGGATTAATTCCACCTGTCCAACCAATCCCTGATCTGGGATTAATTCCACCTGTCCAACCAATCCCCGATCTGGGATTACTTCCACCTGTACAACCAATCCCCGATCTGGGATTAATTCCACCTGTCCAACCAATCCCCGATCTGGGATTACTTCCACCTGTCCAACCAATCCCCGGTCTGCGATTACTTCCACCTGTCCAACCAATCCCCGGTCTGCGATTACTTCCACCTGTCCAACCAATCCCCGGTCTGCGATTACTTCCACCTGTCCAACCAATCCCCGGTCTGGGATTACTTCCACCTGTCCAACCAATCCCCGGTCTGGGATTACTTCCACCTGTCCAACCAATCCCCGATCTGGGATTACTTCCAGGAAGGTAGGCCTCTAGAGGGAGACTGAGTTGTCTCTAGGAAAAAGCCTCACCCTACAGGGTGACTCCAGGACTGTTCATGCCAGgcctcaattccatttcaattcaggaagtactcTGTAACTGCACTTCAAATCAAGGCTTTTCAATGAAGAATGTAGAATTGGATGTAGAATTTAAAAGGACTTGATCCCGAACCTGGTCTGTGTCCAAAAATGTCAgtctgttccctacatagtgcactacttttgactagagttgtccggggcccatagggctgttgtcaaaagtagggcactatgtaggggatagggcaccatttgggagGGAACATGTGTTGTTGTAGTTGGGGGAGGGGTTTGTTTATGTCAGTCATGTGACTGTTGTTACTTTACTGTATATACCTTTGATTCATCAGCACTTAAGAGATGtcatgtttttttgtattttgttttgcaTTGTAATATTTGTAACAAtgaaagtaataataataataataaacatttgttgttgtttttaaaaggtgtg

Function

NR:

description
histone chaperone asf1b-B-like

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939921.1 True 2439 mRNA 0.47 4 4797759 4807623

Neighbor

gene id symbol gene type direction distance location
LOC118936519 LOC106564260 coding downstream 1205 4770679 ~ 4796554 (-)
LOC118938155 LOC106564258 coding downstream 30499 4755078 ~ 4767260 (-)
LOC118938536 NA coding downstream 56048 4737213 ~ 4741711 (-)
LOC118938535 LOC106591275 coding downstream 174772 4620222 ~ 4622987 (-)
LOC118936518 LOC106606801 coding downstream 184805 4606354 ~ 4612954 (-)
LOC110510582 LOC106592158 coding upstream 7122 4814745 ~ 4838008 (-)
gcgrb LOC106591591 coding upstream 135506 4943129 ~ 5000791 (-)
LOC110513279 LOC105029740 coding upstream 220455 5028078 ~ 5055105 (-)
LOC110513280 LOC106564244 coding upstream 250828 5058451 ~ 5061519 (-)
LOC110485437 NA coding upstream 284992 5092615 ~ 5094443 (-)
G1138316 NA non-coding downstream 27124 4767922 ~ 4770635 (-)
G1138320 NA non-coding downstream 39600 4755712 ~ 4758159 (-)
G1138315 LOC100194703 non-coding downstream 47202 4747717 ~ 4750557 (-)
G1138309 NA non-coding downstream 59397 4737495 ~ 4738362 (-)
G1138236 NA non-coding downstream 166896 4627712 ~ 4630863 (-)
G1138340 NA non-coding upstream 16906 4824529 ~ 4825246 (-)
G1138362 NA non-coding upstream 56684 4864307 ~ 4865332 (-)
G1138364 NA non-coding upstream 59369 4866992 ~ 4868323 (-)
G1138542 NA non-coding upstream 132062 4939685 ~ 4940698 (-)
G1138579 NA non-coding upstream 176174 4983797 ~ 5013387 (-)
G1138232 NA other downstream 177895 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 376499 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1031943 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1064459 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1265635 3521685 ~ 3532141 (-)
G1138568 NA other upstream 350542 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 393432 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 410068 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 863837 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 1237234 6044857 ~ 6058622 (-)

Expression


Co-expression Network