LOC110510582 (LOC106592158)


Basic Information

Item Value
gene id LOC110510582
gene name LOC106592158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4814745 ~ 4838008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939922.1
cacgcaaacacacacacacaaacacagacacgcacacagataTCAGGAAGTAATCTGTTCCGTGCTGACTGTGCAGGGTGCTGTCTTGTATGTAAGCAGAAGAGTGTGTACCGTACGTCAGTGTGTgcacgtcagtgtgtgtgtctgccgaCAACAGGTTGCAAGTATGACCCTCTCACCTCAAATTTAAGGATCTCTCACCCCACTGGacagacacatggacacacacctACACGGACCAACACCATGGGCTCAAGATTAAAAGAAAACCCTGACAGGACCTTCTACTGGTTCTTTGAAGCATCTTGTCCAATCGCAAATGACAAAGATCCTGACGTGTTGTTTCAGTTTCCTGAAGACTTCAGTGATGAGGAATCCCGCCAGACCCTACCAAGGTTCTGCTTTCCCTATGACATAGAGAGagTGAGAGATGTGGTGCCAGTGCAACACTTCACCTTTGTGTTGACTGACTTGGAGGGATGCCAACGCTTCGGCTTCTGTCGCCTCACCAGCAGCTCACACACCTGCCTCTGTATGCTtagCTACCTACCTTGGTTTGAGGTGTTTTACAAACTTCTGAACAACCTGGCTGACTATCTGACCAAGGGACAGACCAATGAGATGCGAGAACTGCTGGGCGCCCTCTACACACATCCCCTGCCAGTGGCTGTCGGCTCTGTCACTCTGCAGCTGGGAGAGAAGCTATTGGTCAGGACAGAGATGCCCCGCCCTCCTGGACATGCCCCCCTCACCCCGGGGAAGGGGCAGGAAGGGGTCCCGTACTTCATCGCTCCAGACCCCAGAGGACTCCCTTCCATCCCTGAGAGTaGGAACCTGACAGAGTTGGTGGTAGCGGTAGATGTGTCTAACCTCCTCCAGCTCTATGCCAGTATGTTGTTTGAGAGACGCATCCTCATCCTCTCCAGCAAACTCAGCACATTGACAGCGTGTGTTCATGCCCTCAGTGCTGTGCTCTACCCCATGTACTGGCAACACATCTTCATACCTGTCCTGCCCCCACACCTACTGGACTACtgctgtgctCCGATGCCCTTCCTCATAGGAGTCCACTCCAGTCTGACAGAGAGAGTGAGAAGCCGGGGGTTAGAGGACGTGGTGATTCTGAATGTAGACACCAACACTATAGAGTCTCCCTTCGAAGACCTGAAGAAGATACCAGCAgatgtggtaTCAGGTCTGAAGTTGTGTCTGAAACGTCAGGCAGCGTCAGCAGGTGTGGGCGTGGCCAAGGCCTTCCTCAGGGCTCAGGCTCTGCTGTTTGGAGGATATGGAGACGCTCTGAAGGGAAACACGaATGGTCAGATCATGTTCTGTGAGGAGGTTTTCCTGGACCACAGGTCTCCCAGTATGAGACAGTTCCTACAGAGTGCTGTCCATCTGCAGCTCTTCAAAcagTTTATTGATGGACGTCTGGAGCTGCTGAACAGAGGGATAGAGCCAGACGACCTGTTTGAACAAGAGATGCTACAGTGTGGAACAGCagaagcaggaagCACCAAAGCCTATCATCAACTGGTGGGCAACCTGAAGAAAGGGGGAGGAGCTCTCATCCTTAACGTCAAGTCTAAGACTCACATGTACAAGTCGGCCAAACGTGGCTTGAGGAACTTTCTATCACCCAAgGAGCACGTTGAGATTCTCTCCCTTAAGAGAGGAAACTCCGTgtccggaacacacacacaccgccgcAAACAATCAGATTGCCTTCAGAGCCGTTTACCAATCACACAACACTTTGGGAAGTCTCGTCCCCGTCGTCCAGTTAACAAACAAGGCTGTCTCCTTGACGACGAGAACACACAAGAGAACAGAGACACCTGGGAGGAAGACTGGcaggacagTGCTGTCTCAGGCCCCGTGGCAGACCCAGAgctccaggaggaggaggggggagactcAGGTATGTGTGACCCAGAGGAGATGGACCTCCTGGGGGAGATCTTTGACACGCTGAGTGCCCGGAGCTCCCATGACCGCGGCCTGCTCTACGGGACACGAAGTTTAGACCTGTTTGGACCTGATACTACTGACTACATCAGACAGAGGGGCCTGGCCACTCCCAGTCAGGAAAGTCTAGGCGTGTCCATCGGTGGGAGTGGCAGTCTGCACAGCTGGAACCAGGAGGACGGGCTACAATACATGGGGGAGGGGCCAGAACAGACCGATGATTCTGATGGGCTAGGAGAGGGAcaggcgttgtcagaggaagcATCAGAAACACCTcaagggagaagagaggatgggaggagagagaaggagtggagagaggagggaaggagagaggagggaaggagagag

Function

NR:

description
PREDICTED: DENN domain-containing protein 1B-like, partial

GO: NA

KEGG:

id description
K20160 DENND1; DENN domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939922.1 True 2319 mRNA 0.53 23 4814745 4838008

Neighbor

gene id symbol gene type direction distance location
LOC110493400 as1la coding downstream 7122 4797759 ~ 4807623 (-)
LOC118936519 LOC106564260 coding downstream 18191 4770679 ~ 4796554 (-)
LOC118938155 LOC106564258 coding downstream 47485 4755078 ~ 4767260 (-)
LOC118938536 NA coding downstream 73034 4737213 ~ 4741711 (-)
LOC118938535 LOC106591275 coding downstream 191758 4620222 ~ 4622987 (-)
gcgrb LOC106591591 coding upstream 105121 4943129 ~ 5000791 (-)
LOC110513279 LOC105029740 coding upstream 190070 5028078 ~ 5055105 (-)
LOC110513280 LOC106564244 coding upstream 220443 5058451 ~ 5061519 (-)
LOC110485437 NA coding upstream 254607 5092615 ~ 5094443 (-)
LOC118938158 LOC106592452 coding upstream 274823 5112831 ~ 5115196 (-)
G1138331 NA non-coding downstream 8791 4805507 ~ 4805954 (-)
G1138316 NA non-coding downstream 44110 4767922 ~ 4770635 (-)
G1138320 NA non-coding downstream 56586 4755712 ~ 4758159 (-)
G1138315 LOC100194703 non-coding downstream 64188 4747717 ~ 4750557 (-)
G1138309 NA non-coding downstream 76383 4737495 ~ 4738362 (-)
G1138362 NA non-coding upstream 26299 4864307 ~ 4865332 (-)
G1138364 NA non-coding upstream 28984 4866992 ~ 4868323 (-)
G1138542 NA non-coding upstream 101677 4939685 ~ 4940698 (-)
G1138579 NA non-coding upstream 145789 4983797 ~ 5013387 (-)
G1138591 NA non-coding upstream 171960 5009968 ~ 5010813 (-)
G1138232 NA other downstream 194881 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 393485 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1048929 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1081445 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1282621 3521685 ~ 3532141 (-)
G1138568 NA other upstream 320157 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 363047 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 379683 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 833452 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 1206849 6044857 ~ 6058622 (-)

Expression


Co-expression Network