LOC110513280 (LOC106564244)


Basic Information

Item Value
gene id LOC110513280
gene name LOC106564244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5058451 ~ 5061519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939925.1
GCtgctctcctcccactcctctatgTTAAGCTGAGCTCCAGTGAGACAGTCTGGTCAATCTGTGTGTTTAACAGAGGAATGAACACACCATCACAGACCTCTACAACTCCACAGTGTTACACTACCCAGGACAGGACTACTACTCCACAGTGTCACACTACCCAGGACAGACCTCTCCTACTCCACAGTGTTACACTTCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACTATCCTACTCCACAGTGTTACACTCCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACCTCTCCTACTCCACAGTGTTACACTCCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACCTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACCTCTCCTACTCCACAGTGTTACACTCCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGGACTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACCTCTCCTACTCCACAGTGTTACACTCCACAGGACAGACCTCTTCATTCTGTCCACTGGTAGAGAGCAGCAGAGTCCTCTGGGGTTTGGAACAgaatattgttgttgttgttgccccgTCTGAGGATGTGGAAGAGGAGGGGTTTATAGTGACCATCACTGTTTCTACCATAAGACACAGAACTACTGGATATTCAAccaagaggaaagagacagatCCATTAATGTGGAAGAGGAGACCATCACTGTTTCTACCATAAGACACAGAACTACTGGATATTCAAccaagaggaaagagacagatCCATTAATGTGGAAGAGGAGACCATCACTGTTTCTACCATAAGACACAGAACTACTGGATATTCAAccaagaggaaagagacagatCCATTCCTGCAACAATCCCGAGACGTACAAGAACACGTTATCAAGGGGAACTTCTGTCACCTGTAATCATTGttttggagaagagaggagatttGACGCCATCTTGACAACACTCATCATCTAGTGAAAACCAGGGGAAACACACCAGGCCCAGTTGCAAGCAAAGTTCTTGAACAGAACTGTTTGGGACTTTTGCACGTCGCCATGGCGTCCACAGGTCTACAGTTACTTGGCCTCCTATTGGCCGTGATGGGCTGGGTGGGCGGGGCTCTCGTCTGCGCCGCCCCCTTGTGGCGAGTCTCCGCCTTCGCGGGTGGGGAGATCGTGATCGCCCAGGTTCTCTGGGAGGGGCTATGGATGACGTGTTTGTCCCAGAGTACGGGACAGATCCAGTGTAAGACTTACGACTCTACCCTGGCCCTCCCCGTCTCCGCCCAGGTGTCCCGTACCCTCTCCgtgctctccctcctcttctgcctcttcGCCCTCCTGCTAGGCGTGGCTGGGGCGAAGTGCACCAAGTGTCTAGGGGAAGGAGCCTACTCGTCCAAGGCTAGGCTAGCCCGCGTGGCTGGGgctctgttcttcttctctggGCTGCTCTACCTGATACCCATCTGCTGGACGGCCTACGCCGTGGTCAGGGATTTTTACGATCCAAAAGTCGCCGCGCCGCTGAAGAGAGAGTTAGGCCCCGCCTTGTATCTAGGCTGGGGGGCGGGAATTCTGCTGCTGGTTGGAGGGGCTCTGCTAAACGCAGGCTCCTCCCCTCCAGGGGTTAGGGCAACGCCTACTTTTGGGGGAGGTGGGAGGAGTAACCCACTGCCCGTGGTGGTAGAGGAGAAGGAGTATGTTTGAACCGTCCCacaccagggttgtgttcattactTTGtgagaaaatggactgaaacagggagggactacctgaacgcGTCCAATAAGAAATGTTCATTTTTGTTGTCCAATGTAAAACTTTTTGCAACATTATGCCCTAATGATTACAACCCCGTCACTAAACTCtcagtgaaggagagacaggtCAACATGTAAATAAGAAAATGCTTATGATTACGTTTCAGAAAATCTGCATGATTATTCTCCATTTCTTTATGACCACTTGTAGACAGCTTGGTTATTTTGTTATGACATCATCTTCTAGTTGTTTTCATTATGACATCATCTTCTAGTTGTTTTCATTATGACATCATCTTCTAGTTGTTTTCATTATGACATCATCTTCTAGTTGTTTTCCTTATGACATCATCTTCTAGTTGTTTTCCTTATGACATCATCCTCTAGTTGTTTTTATTCTGATTTGAGTTTTCTGTGTTAACTTCTTCTTGGTGAGTGTAATTTATACATGAAATAATAAAGTATTTTACAACA

Function

NR:

description
claudin-9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939925.1 True 2363 mRNA 0.49 2 5058451 5061519

Neighbor

gene id symbol gene type direction distance location
LOC110513279 LOC105029740 coding downstream 3346 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 57660 4943129 ~ 5000791 (-)
LOC110510582 LOC106592158 coding downstream 220443 4814745 ~ 4838008 (-)
LOC110493400 as1la coding downstream 250828 4797759 ~ 4807623 (-)
LOC118936519 LOC106564260 coding downstream 261897 4770679 ~ 4796554 (-)
LOC110485437 NA coding upstream 31096 5092615 ~ 5094443 (-)
LOC118938158 LOC106592452 coding upstream 51312 5112831 ~ 5115196 (-)
LOC110485443 LOC106592430 coding upstream 66705 5128224 ~ 5141579 (-)
LOC110485440 LOC106597237 coding upstream 77065 5138584 ~ 5141623 (-)
LOC118938159 LOC106592320 coding upstream 87721 5149240 ~ 5155100 (-)
G1138598 NA non-coding downstream 13526 5041521 ~ 5044925 (-)
G1138599 NA non-coding downstream 15952 5041931 ~ 5042499 (-)
G1138554 NA non-coding downstream 30685 5026006 ~ 5027766 (-)
G1138558 NA non-coding downstream 35521 5022616 ~ 5022930 (-)
G1138595 NA non-coding downstream 38101 5020146 ~ 5020350 (-)
G1138607 NA non-coding upstream 3042 5064561 ~ 5065005 (-)
G1138601 NA non-coding upstream 4352 5065871 ~ 5071930 (-)
G1138609 NA non-coding upstream 11932 5073451 ~ 5073730 (-)
G1138610 NA non-coding upstream 13012 5074531 ~ 5074974 (-)
G1138611 NA non-coding upstream 15049 5076568 ~ 5077162 (-)
G1138232 NA other downstream 438587 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 637191 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1292635 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1325151 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1526327 3521685 ~ 3532141 (-)
G1138568 NA other upstream 96646 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 139536 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 156172 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 609941 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 983338 6044857 ~ 6058622 (-)

Expression


Co-expression Network