LOC110485437


Basic Information

Item Value
gene id LOC110485437
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5092615 ~ 5094443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035416.1
TCTATTTTCATTGTTTAACTGGTAAACAACATCACTTCATTGTCTAATTTCTATGCTTTATTGTAGACACCGTCTTCATTGAGTTGAATTGAGTTCAGGATAAACAACAGAGGAAAAGTACAACAAAATGATGACTTCAGCTCCTGATAAACCAGATTGTGGGCCGATGGTGGTTACTTTTGGATTCTTGACGTTGGTCATTGGAATCGCTGTTGGAGTGAAACTGAAGGAGGCCACAGACCAGTTCATTCAACAACATAAATGGAAGATCATTGTCTTTGTCACTGTTTTTATTGTTGTTTGTATCATGGTGCTTCTGATCTTGAATAAACAGGAAGTATAGAGGGATATTAAGGAATGACCCAAACAATTAGCAAACACttctcagtcagtcacacacaacTCCCTCTggaaaataacatctgctaaatgactgaactGTAAGCAACATTTGGAAAAAAGTGACTCATAGTAGGCTAGATGTATTTGTCTAAGATTGTATTTGTCATCCTATTTTAATGTGACCAAGATCCCTTTCCATCTCTGGCCATCTCTGTGTGTGCTCGTACTTTGTCAATGTTTGTGATTTATAGTTGTAAGTGTCTTTATAGATCAGTGGAACATCGACTTAATATTATGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTTTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGCTCATCAACCTGTCAGTATGTTCTGGGCTGATTAAACCAAAtagtaaaatcaca
>TU1297664
attttgttcTATGTTTATTCTTCTCTGTGATCTGTTTATTCTGTTCTATTTTCATTGTTTAACTGGTAAACAACATCACTTCATTGTCTAATTTCTATGCTTTATTGTAGACACCGTCTTCATTGAGTTGAATTGAGTTCAGGATAAACAACAGAGGAAAAGTACAACAAAATGATGACTTCAGCTCCTGATAAACCAGATTGTGGGCCGATGGTGGTTACTTTTGGATTCTTGACGTTGGTCATTGGAATCGCTGTTGGAGTGAAACTGAAGGAGGCCACAGACCAGTTCATTCAACAACATAAATGGAAGATCATTGTCTTTGTCACTGTTTTTATTGTTGTTTGTATCATGGTGCTTCTGATCTTGAATAAACAGGAAGTATAGAGGGATATTAAGGAATGACCCAAACAATTAGCAAACACttctcagtcagtcacacacaacTCCCTCTggaaaataacatctgctaaatgactgaactGTAAGCAACATTTGGAAAAAAGTGACTCATAGTAGGCTAGATGTATTTGTCTAAGATTGTATTTGTCATCCTATTTTAATGTGACCAAGATCCCTTTCCATCTCTGGCCATCTCTGTGTGTGCTCGTACTTTGTCAATGTTTGTGATTTATAGTTGTAAGTGTCTTTATAGATCAGTGGAACATCGACTTAATATTATGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGTAACCAATTGCCTGTGTCTCTTCAACTCATGTGTTTTTGCTCATCAACCTGTCAGTATGTTCTGGGCTGATTAAACCAAAtagtaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584648

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035416.1 False 972 mRNA 0.37 2 5092615 5094351
TU1297664 True 972 lncRNA 0.37 4 5092620 5094443

Neighbor

gene id symbol gene type direction distance location
LOC110513280 LOC106564244 coding downstream 31096 5058451 ~ 5061519 (-)
LOC110513279 LOC105029740 coding downstream 37510 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 91824 4943129 ~ 5000791 (-)
LOC110510582 LOC106592158 coding downstream 254607 4814745 ~ 4838008 (-)
LOC110493400 as1la coding downstream 284992 4797759 ~ 4807623 (-)
LOC118938158 LOC106592452 coding upstream 18480 5112831 ~ 5115196 (-)
LOC110485443 LOC106592430 coding upstream 33873 5128224 ~ 5141579 (-)
LOC110485440 LOC106597237 coding upstream 44233 5138584 ~ 5141623 (-)
LOC118938159 LOC106592320 coding upstream 54889 5149240 ~ 5155100 (-)
LOC118938161 LOC106592320 coding upstream 73978 5168329 ~ 5177917 (-)
G1138612 NA non-coding downstream 8081 5082047 ~ 5084534 (-)
G1138611 NA non-coding downstream 15453 5076568 ~ 5077162 (-)
G1138610 NA non-coding downstream 17641 5074531 ~ 5074974 (-)
G1138609 NA non-coding downstream 18885 5073451 ~ 5073730 (-)
G1138601 NA non-coding downstream 20685 5065871 ~ 5071930 (-)
G1138566 NA non-coding upstream 18001 5112352 ~ 5124824 (-)
G1138574 NA non-coding upstream 38966 5133317 ~ 5133858 (-)
G1138619 NA non-coding upstream 50246 5144597 ~ 5146150 (-)
G1138620 NA non-coding upstream 51912 5146263 ~ 5146636 (-)
G1138572 NA non-coding upstream 78098 5172449 ~ 5190371 (-)
G1138232 NA other downstream 472751 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 671355 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1326799 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1359315 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1560491 3521685 ~ 3532141 (-)
G1138568 NA other upstream 63814 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 106704 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 123340 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 577109 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 950506 6044857 ~ 6058622 (-)

Expression


Co-expression Network