LOC110485443 (LOC106592430)


Basic Information

Item Value
gene id LOC110485443
gene name LOC106592430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5128224 ~ 5141579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939932.1
CAACAGGGAACAACAATATACAGATCCGTGCAACACTAAAATAGTAGAAATGGAACGAGGAAGGACTCTGAAGATTCTGTTCCTGTTGACACTCTGTCTGCAAGACTTCACTGGTCAATgccaagTTTCAGGGCAGCTCTCTGACCTGAGGATAGTTCTGGTGGGGAAGACTGGATCAGGGAAGAGTGCAACAGGAAACACCatcctggggagggaggggtttAAAGAAGACTCCTCCCCTGAGTCTGTTACCTCACACTGTATGAAGCAGAGTGGAATGGTGGCTGGAAAGAAGATCAATGTGATTGACACACCAGGACTATTTGACACAAAATTGACTGATACGGAAATGAAAAGTGAAATAGAAAAGGCCATCTACATGTCAGTCCCGGGACCCCACGTCTTCCTGCTGGTGATCAGACTTGGGGTAAGgttcacagaggaggagaggaacactgTGAAGTGGATCCAGGAGAACTTTGGAGACGAAGCCTCAATGTACACCATCTTGCTGTTCACTCATGGAGATCAACTGAAGGGAAAATCAGTGGAGGAGTTTCTGGCTGAGAGCAAAGAGTTACGGAAACTCATCAATATCTGTGGGGGCAGATATCACTCCCTAATCAATGACAAGAGAAAACACAACACTCAGGTCCCAGAGCTGCTGAAGAAGATAGACAGGATGGTGATGAAGAATGGAGGACAACACTACACCAATGAGATGTACCAGGAGGCCCAGAGGAAGatcgaagaggaggaggagaggaagaaacaggaagaggataagagagagaaagagaggcaacagaaggagagagaaaggatcaGAAGAGAAGAAATATTGTCTCGATGCAAGATATCAGCATTGGTCAGTTCGGCAGTATTGGGGTGGGGATACAAATTCTCATCTCCATTGTGGTTAGCAGCAGGATCTGTATCAGCCATTTTTGAAGGTTATCAATGCATGGATGCTTATTTCAATTGGGGTGGTTCTGACCCAAAAGAGCACGAGGAATAGGATttcaccatctcagattgttctgaagttAAGGTTAGTTTTCAAgctatttttttgggggggggggtggaaatataatttgatcactgagaaattaagctaattgattgcacccaaattggctaTTTTAATTGATaagatattcaataaatatacactatatatacaaacgtatgtggacaccccttcaaatgagtggtttcggctatttcagccacaccccgtTGCTGACAGATTTATAAAATCGAGcagacagccatgcaatctctatagacaaacattggcagtagaatggccttactgtatTATTTAGTACTTTTATGTATTCTTGGCATTTCTGTCCCTTTATGACATTTGTCTCCCTCATAGCATAAACCATTTATTTAGAGG
>XM_036939931.1
GAATGTAAACTGCAGCACACTGGTATTGTAAGGTGCAGCACTTTAGTGTTGCATGAGttttagaccattccattggttCGAGGTAAATCTCCACCCACCTGGGGCATCTGCTAAGCAAAACCAGCTGGACCACTGCTTCAGGTCTCTCAGTGACAACAGGGGACAACAATATACAGATCTGTGCAACACTAAAATAGTAGAAATGGAACGAGGAAGGACTCTGAAGATTCTGTTCCTGTTGACACTCTGTCTGCAAGACTTCACTGGTCAATgccaagTTTCAGGGCAGCTCTCTGACCTGAGGATAGTTCTGGTGGGGAAGACTGGATCAGGGAAGAGTGCAACAGGAAACACCatcctggggagggaggggtttAAAGAAGACTCCTCCCCTGAGTCTGTTACCTCACACTGTATGAAGCAGAGTGGAATGGTGGCTGGAAAGAAGATCAATGTGATTGACACACCAGGACTATTTGACACAAAATTGACTGATACGGAAATGAAAAGTGAAATAGAAAAGGCCATCTACATGTCAGTCCCGGGACCCCACGTCTTCCTGCTGGTGATCAGACTTGGGGTAAGgttcacagaggaggagaggaacactgTGAAGTGGATCCAGGAGAACTTTGGAGACGAAGCCTCAATGTACACCATCTTGCTGTTCACTCATGGAGATCAACTGAAGGGAAAATCAGTGGAGGAGTTTCTGGCTGAGAGCAAAGAGTTACGGAAACTCATCAATATCTGTGGGGGCAGATATCACTCCCTAATCAATGACAAGAGAAAACACAACACTCAGGTCCCAGAGCTGCTGAAGAAGATAGACAGGATGGTGATGAAGAATGGAGGACAACACTACACCAATGAGATGTACCAGGAGGCCCAGAGGAAGatcgaagaggaggaggagaggaagaaacaggaagaggataagagagagaaagagaggcaacagaaggagagagaaaggatcaGAAGAGAAGAAATATTGTCTCGATGCAAGATATCAGCATTGGTCAGTTCGGCAGTATTGGGGTGGGGATACAAATTCTCATCTCCATTGTGGTTAGCAGCAGGATCTGTATCAGCCATTTTTGAAGGTTATCAATGCATGGATGCTTATTTCAATTGGGGTGGTTCTGACCCAAAAGAGCACGAGGAATAGGATttcaccatctcagattgttctgaagttAAGGTTAGTTTTCAAgctatttttttgggggggggggtggaaatataatttgatcactgagaaattaagctaattgattgcacccaaattggctaTTTTAATTGATaagatattcaataaatatacactatatatacaaacgtatgtggacaccccttcaaatgagtggtttcggctatttcagccacaccccgtTGCTGACAGATTTATAAAATCGAGcagacagccatgcaatctctatagacaaacattggcagtagaatggccttactgtatTATTTAGTACTTTTATGTATTCTTGGCATTTCTGTCCCTTTATGACATTTGTCTCCCTCATAGCATAAACCATTTATTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939932.1 False 1408 mRNA 0.43 3 5128224 5141579
XM_036939931.1 True 1556 mRNA 0.44 3 5128229 5131464

Neighbor

gene id symbol gene type direction distance location
LOC118938158 LOC106592452 coding downstream 13028 5112831 ~ 5115196 (-)
LOC110485437 NA coding downstream 33873 5092615 ~ 5094443 (-)
LOC110513280 LOC106564244 coding downstream 66705 5058451 ~ 5061519 (-)
LOC110513279 LOC105029740 coding downstream 73119 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 127433 4943129 ~ 5000791 (-)
LOC118938159 LOC106592320 coding upstream 7661 5149240 ~ 5155100 (-)
LOC118938161 LOC106592320 coding upstream 26750 5168329 ~ 5177917 (-)
LOC118938162 LOC106592646 coding upstream 58900 5200479 ~ 5211509 (-)
LOC118936520 NA coding upstream 74832 5216411 ~ 5244441 (-)
LOC110516762 LOC106592646 coding upstream 103867 5245446 ~ 5266487 (-)
G1138566 NA non-coding downstream 3400 5112352 ~ 5124824 (-)
G1138612 NA non-coding downstream 43690 5082047 ~ 5084534 (-)
G1138611 NA non-coding downstream 51062 5076568 ~ 5077162 (-)
G1138610 NA non-coding downstream 53250 5074531 ~ 5074974 (-)
G1138619 NA non-coding upstream 3018 5144597 ~ 5146150 (-)
G1138620 NA non-coding upstream 4684 5146263 ~ 5146636 (-)
G1138572 NA non-coding upstream 30870 5172449 ~ 5190371 (-)
G1138628 NA non-coding upstream 81177 5222756 ~ 5228090 (-)
G1138632 NA non-coding upstream 108683 5250262 ~ 5251136 (-)
G1138232 NA other downstream 508360 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 706964 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1362408 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1394924 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1596100 3521685 ~ 3532141 (-)
G1138568 NA other upstream 16586 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 59476 5201055 ~ 5262513 (-)
LOC118938515 LOC106592948 other upstream 529881 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 903278 6044857 ~ 6058622 (-)

Expression


Co-expression Network