LOC110485440 (LOC106597237)


Basic Information

Item Value
gene id LOC110485440
gene name LOC106597237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5138584 ~ 5141623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556506.2
TGGCTATGCAAAACCAGCAGGACCACTGCTTCAGGTGTCTGTGACAACAGGGAACAACAATATACAGATCCGTGCAACACTAAAATAGTAGAGATGGAACAAGGGACAGGAAGGATTCTGAAGATTCTGTTCCTGTTGACACTCACTGGTCAAtgccaagTTTCAGGGCAGCTCTCTGACCTGAGGATAGTTCTGGTGGGGAAGACTGGATCAGGGAAGAGTACAACAGGAAACACCatcctggggagggaggggtttAAAGTGGAGGCTTCTCCAGTGTCTGTGACTGCACAGAGTGAGAAACAGAGTGGAGTGGTGGATGGGAGGAAGATTGATGTCATCGACACCCCGGGGCTCTATGACACAACAATGTCTCAAGAAGAGATAAAAAGAGAAATAGAGAAGGCCATCTACATGTCAGTCCCAGGACCCCACGCCTTCCTGCTGGTGATCAGACTGGGGAGGTTCACAGAGGAGGAGCAGAACACTGTGAAGTGGATCCAGGAGAACTTTGGAGAAGATGCCTCAATGTACACCATCTTGCTGTTCACTCATGGAGATCAACTGAAGGGCAAAACAGTCAAAGGGTTTCTTGCTCAGAGCAAAGCGCTAAGGAGACTCATCAATATGTGTGGGGGCAGATATCACTCCCTAATCAATGACAAGAGAGAAGACAACACTCAGGTTAGAGAGCTGCTGGAGAAGATTGAGGAGATGGTGGTGGAGGACAATGGAGGAGAACACTACACCAGTGCTGACTATGAAGAGGCTCAGAGAAAGATCAGCGATATTACGTTTTACTGTAAACTGGCAGCGTACGGCGGTCTAGCCGCAGCAGGTCTAGGGATGTTGTCTGCTTCACCGGTATTGGTGGCAGCAGGTCTAGCTGTAGGCGTCAGCCAAGGGTATGAATGCACTATGCATATGCTAGGCTTTTAAAACACCGGGGGTACGTTCAGTTGGTCTTAACGTTTTGCTACGTATGGCAACGGTACTTACTGAATGATATAACAGTTCTTTCAAAACCATTTgcaatgttatatatatatgctAGCCGGGTGGCAGGGTGGCCCTAGCAGGGTGTGAACGTGGAAAATGTGAACAAAACACTCCTGCTGCACTGTACACAATCACCCTCTCATCACCTATAGTTACAATGTTCCTCAACTCAAATCATGATAGTTTTTGAAAGCAGCCCAGGTGTTGACCATGTTTTTTCATCTTAGTGCATGTATTTAGTGTGGAAATATAGTATTGTTGTGTCTTTACTATGGATTAAATGACatgacatgctattttataaaataaattatctgtaattaatattacctgattaaactaatcatgcaaatgtaattaactaggaagtcggggcaccacggaagcatgtttatagagctgttgtcttccgaataaactcttaaagacctggtca

Function

NR:

description
GTPase IMAP family member 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556506.2 True 1435 mRNA 0.45 3 5138584 5141623

Neighbor

gene id symbol gene type direction distance location
LOC118938158 LOC106592452 coding downstream 23388 5112831 ~ 5115196 (-)
LOC110485437 NA coding downstream 44233 5092615 ~ 5094443 (-)
LOC110513280 LOC106564244 coding downstream 77065 5058451 ~ 5061519 (-)
LOC110513279 LOC105029740 coding downstream 83479 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 137793 4943129 ~ 5000791 (-)
LOC118938159 LOC106592320 coding upstream 7617 5149240 ~ 5155100 (-)
LOC118938161 LOC106592320 coding upstream 26706 5168329 ~ 5177917 (-)
LOC118938162 LOC106592646 coding upstream 58856 5200479 ~ 5211509 (-)
LOC118936520 NA coding upstream 74788 5216411 ~ 5244441 (-)
LOC110516762 LOC106592646 coding upstream 103823 5245446 ~ 5266487 (-)
G1138574 NA non-coding downstream 4726 5133317 ~ 5133858 (-)
G1138566 NA non-coding downstream 13760 5112352 ~ 5124824 (-)
G1138612 NA non-coding downstream 54050 5082047 ~ 5084534 (-)
G1138611 NA non-coding downstream 61422 5076568 ~ 5077162 (-)
G1138619 NA non-coding upstream 2974 5144597 ~ 5146150 (-)
G1138620 NA non-coding upstream 4640 5146263 ~ 5146636 (-)
G1138572 NA non-coding upstream 30826 5172449 ~ 5190371 (-)
G1138628 NA non-coding upstream 81133 5222756 ~ 5228090 (-)
G1138632 NA non-coding upstream 108639 5250262 ~ 5251136 (-)
G1138232 NA other downstream 518720 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 717324 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1372768 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1405284 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1606460 3521685 ~ 3532141 (-)
G1138568 NA other upstream 16542 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 59432 5201055 ~ 5262513 (-)
LOC118938515 LOC106592948 other upstream 529837 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 903234 6044857 ~ 6058622 (-)

Expression


Co-expression Network