LOC118938162 (LOC106592646)


Basic Information

Item Value
gene id LOC118938162
gene name LOC106592646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5200479 ~ 5211509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939934.1
agatctgggaccaggttagacAACTACATAGTTACATTTGAAAATGTTTCATTTGCTATTTTAATTTGAACCTTTTTCCCAGAAGAAGAAGTCTGTGTCCAACACATTTCATTTTACACAGAGTTGTGGCTAATCCAAGGTTGAGTTGTCAGAGGAGGTTGATAATAGTGACACCCAATCAGATTTCAGCCTCTGCCTGTCCTGAGGTGAATTactcctctcattggctagaaatGACTAGTTACAGGTGAAACGAAACTTAACTCTGACTATAAGTTGCAGCACATAGCTTCAGCTCTCACAGTCACAACAGGGGACAATTAACAGACACGTGCAACTACACTAAAAAGATGGAACGAGGAAGAGGAGGGACTCTGAAGATTATTTTCCTGTTGACACTCTGTCTGCAAGCCTTCACTGGTCAAtgccaagATTCAGGGCATCCCTCTGATCTGAGGATAGTTCTGGTGGGGAAGACTGGATCAGGGAAGAGTGCAACAGGAAACACCatcctggggagggaggggtttAGAGTGGGGGCTTATCCAGTGTCTGTGACTACACAGAGTGAGAAACAGAGTGGGGAGGTGGATGGGAGGAAGATTGATGTCATCGACACCCCGGGACTCTATGACACGACAATGTCTAAAGAAGAGATGAAAAGTGAAATAGAGAAGGCCACCTACATGTCAGTCCCAGGACCCCACGCCTTCCTGCTGGTGATCAGACTTGGGGTAAGgttcacagaggaggagaggaacactgTGAAGCGGATCCAGGAGTTCTTTGGAGAAGAATCATTAAAGTACACCATCATTCTGTTCACACATGGAGACCAGCTGGAGGACATGTCATTGGTGGACTTTCTAAGTGATAGTGAGGAGCTTATGAAACTCATCAAGGTCTTTAAGGGCAGAAATCATGTCTTCGATAATAAAAAGAAGAATGACAACACTCAGGTCCCAGAGCTGCTGAAGAAGATAGAGGAGATGGTGAAGAAGAATGGAGGACAAAACTACACCAATGAGATGTACCAGGAGGTTCAGAGGAAGATCGAAGAGCAGAAGAAGAAAAAGTGGGGGATTAATAAGAATAAGTTACTGGACCTTTCGGGAAAGGCTGTGGGATTGATCGCAACTGGTGTCACAGCGCTGGTTTCAGGACCAGCAGCTATCGCAGTTGGAGGTGCTGTACTTGCAAAAGATGTATTTTACCTTTTTTACGATTCTAATTAAGTAAAAATGAGGAAGAGGTGGCAGTGTGAAGTACCACTCTCTTCCTCATCTTAATGTCAAGTCGTAGCAGTAGAGTAGATTATTACTGTATAATGACAACCATCAGGGATTGTTCATCACTTTCTAATATTATCAGTTATTTACCATGTTTATTATTCAAAGTCTCAGggataataacatactgtaggatGACATTTATAATTCAACAAGAACAAACAGACAGAAAATCTGAATACTACAAATCTAGTTTGATTAACTCAGAGTCAGATAATAGGTTAGAATGGGTAAAGACATTCTAGGCTTCTGGTTATCTACAGTATTGATGTATCTACCCTTCTTCCATCTACAGT

Function

NR:

description
PREDICTED: GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939934.1 True 1585 mRNA 0.42 3 5200479 5211509

Neighbor

gene id symbol gene type direction distance location
LOC118938161 LOC106592320 coding downstream 22562 5168329 ~ 5177917 (-)
LOC118938159 LOC106592320 coding downstream 45379 5149240 ~ 5155100 (-)
LOC110485440 LOC106597237 coding downstream 58856 5138584 ~ 5141623 (-)
LOC110485443 LOC106592430 coding downstream 58900 5128224 ~ 5141579 (-)
LOC118938158 LOC106592452 coding downstream 85283 5112831 ~ 5115196 (-)
LOC118936520 NA coding upstream 4902 5216411 ~ 5244441 (-)
LOC110516762 LOC106592646 coding upstream 33937 5245446 ~ 5266487 (-)
LOC110485445 LOC106564237 coding upstream 67437 5278946 ~ 5280863 (-)
LOC110517601 tmed1 coding upstream 373545 5585054 ~ 5595560 (-)
LOC110516670 LOC106592431 coding upstream 415102 5626611 ~ 5629846 (-)
G1138572 NA non-coding downstream 10108 5172449 ~ 5190371 (-)
G1138564 NA non-coding downstream 25980 5084925 ~ 5174499 (-)
G1138620 NA non-coding downstream 53843 5146263 ~ 5146636 (-)
G1138619 NA non-coding downstream 54329 5144597 ~ 5146150 (-)
G1138574 NA non-coding downstream 66621 5133317 ~ 5133858 (-)
G1138628 NA non-coding upstream 11247 5222756 ~ 5228090 (-)
G1138632 NA non-coding upstream 38753 5250262 ~ 5251136 (-)
G1138571 NA non-coding upstream 46588 5258097 ~ 5258533 (-)
G1138634 NA non-coding upstream 61875 5273384 ~ 5273692 (-)
G1138637 NA non-coding upstream 65540 5277049 ~ 5277273 (-)
G1138568 NA other downstream 37525 5158165 ~ 5162954 (-)
G1138232 NA other downstream 580615 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 779219 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1434663 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1467179 3731621 ~ 3733300 (-)
LOC118938515 LOC106592948 other upstream 459951 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 833348 6044857 ~ 6058622 (-)
G1139916 NA other upstream 880850 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1394810 6600141 ~ 6649233 (-)

Expression


Co-expression Network