LOC118936520


Basic Information

Item Value
gene id LOC118936520
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5216411 ~ 5244441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939939.1
AACTACAGACTGCAGCCATTTCAAGAGTTACAGAAAAACCACTTGAGCTGGTAAACTACAGACTGCAGCTATTTGAATTGCAAACGTAAGCAAGAAGATGAACAGAATGGCAAGAAGTGATCATCCAAGACAGCCAGCTGATCTGAGGATAGTTCTGTTGGGGAAGACTGGAGCAGGGAAGAGTGCAACCGGAAACACCATCctgaggagagagtggtttactTCTGAGTCAAGTCCAAATCCAGTGACTGAAAAGTGTGAGAAACAAAGTGGAGTGGTGGATGGGAGGAAGATTTATGTCATCGACACTCCTGGGATCGATGACACATCATTGACAGACACATATTTGATTTATAAAATATGGAAACAGTTTCGGAGAACAGATAAAGTCGAAATAGAGAAATCCATCAAGATGTCAGTTCCAGGACCCCATGTGTTTCTGCTGGTGATCAGACTGGATAGATACACAGAGGAGCAAAGAAAAGCAGTGAAGTACATCCAGGACAACTATGGAAAAGAGGCCTCAGACTTCACTATGGTATTATTCACTGGTGCTGATCAGCTGGATAACACAACAGTAGAGGAGTTTCTGAGGGAGAGTAAGGATCTTCAGGCACTAGTCAACAGCTGTGGAGGCAGATATCATGTCTTTAacaacagagagcagagagaccgtGCTCAGGTCAGAGAGCTGCTGAGGAAGATAGACAATATGGTGAAGTTGAACAGATACTACACCAATGAGGTGTATGAGAAGGCTCAGAAAGAGATCAGGAACAGTCAGTTGTTAGAGTTGGGTGTAGGAGTTGCCTGCACAGCTACAGCAGTAGGACTAGGTATCAAAGCCCCAAACAAGGTTTCCCTTATAGGGATAGGAGTAGCAACAGTTATAGGAGGAGAGATAGCACCGATTGTAACCAAGAAGAAGAACAATAATTAACTACAGGATAAGTGTCTGTAAATAAGCCCTGAAGGAACAACATGATTATTGCTATAATGATTTATCTTTGTAGGATTTATTATTGATGATATGGTTTAACATTTACCCAATTTTGGTTGTCACTGCATTTAACCAAATGACTAAATCATGCGTTAAAGTTATTAAGTTAATTGTAAGAGTTTTACTTTGCATAAAGGAAGAGACAGTACATTTGTTCAACATGGCTTCCATACCTGAAGCATCTCTGGTTGTAATGTAAAGTAATTGAATGTGCTGCTCgctaatcacatttatttattgtcTTTTGTTATGTCCTTTTAAACATGCTGTTAGGTAGTGATGGGCACTCATATGGAACATCTATATCGACGTCAGTTGTATTGTTTCTAACCTACCCAACCAGTTGTATTACAATATGAAGCTTGTTGATGGCCATCAGCAGGCAGCAGTAAGCTAAGTTGAGAGCCTGTGTAAGGGTGTTGTGCCTGTAGGAACAGTGATGTGTGGTCTTTTACATACAGTAATGTTAACAGCAACGATAAGGCCATATCAAGAAATGCCTTGTCATATTGATATCAAGTTATATCATATTGAATTATCGATATTGATGCCCACCATTTCTGTCCTTCTTTAcaaagttatttatttatttaaaaacttTGTAATACTTTTTAGATTATTTACAAAATAGAGAAATGTAATATTTAGTTGATTCATTGAAACTGCCCTTAATGTTGACCTGTATTGATTAaacacggggcggcagggtagcctagtggttagagcattggactagtaaccggaaggttgcgagttcaaacccccgagctgacaaggtacaaatctgtc
>XM_036939938.1
TGGTAAACTACAGACTGCAGCCATTTCAAGAGTTACAGAAAAACCACTTGAGCTGGTAAACTACAGACTGCAGCTATTTGAATTGCAAACGTAAGCAAGAAGATGAACAGAATGGCAAGAAGTGATCATCCAACTCATTCACATTTGGTGGAAGATGAGACATGGTTCGGACAGCCAGCTGATCTGAGGATAGTTCTGTTGGGGAAGACTGGAGCAGGGAAGAGTGCAACCGGAAACACCATCctgaggagagagtggtttactTCTGAGTCAAGTCCAAATCCAGTGACTGAAAAGTGTGAGAAACAAAGTGGAGTGGTGGATGGGAGGAAGATTTATGTCATCGACACTCCTGGGATCGATGACACATCATTGACAGACACATATTTGATTTATAAAATATGGAAACAGTTTCGGAGAACAGATAAAGTCGAAATAGAGAAATCCATCAAGATGTCAGTTCCAGGACCCCATGTGTTTCTGCTGGTGATCAGACTGGATAGATACACAGAGGAGCAAAGAAAAGCAGTGAAGTACATCCAGGACAACTATGGAAAAGAGGCCTCAGACTTCACTATGGTATTATTCACTGGTGCTGATCAGCTGGATAACACAACAGTAGAGGAGTTTCTGAGGGAGAGTAAGGATCTTCAGGCACTAGTCAACAGCTGTGGAGGCAGATATCATGTCTTTAacaacagagagcagagagaccgtGCTCAGGTCAGAGAGCTGCTGAGGAAGATAGACAATATGGTGAAGTTGAACAGATACTACACCAATGAGGTGTATGAGAAGGCTCAGAAAGAGATCAGGAACAGTCAGTTGTTAGAGTTGGGTGTAGGAGTTGCCTGCACAGCTACAGCAGTAGGACTAGGTATCAAAGCCCCAAACAAGGTTTCCCTTATAGGGATAGGAGTAGCAACAGTTATAGGAGGAGAGATAGCACCGATTGTAACCAAGAAGAAGAACAATAATTAACTACAGGATAAGTGTCTGTAAATAAGCCCTGAAGGAACAACATGATTATTGCTATAATGATTTATCTTTGTAGGATTTATTATTGATGATATGGTTTAACATTTACCCAATTTTGGTTGTCACTGCATTTAACCAAATGACTAAATCATGCGTTAAAGTTATTAAGTTAATTGTAAGAGTTTTACTTTGCATAAAGGAAGAGACAGTACATTTGTTCAACATGGCTTCCATACCTGAAGCATCTCTGGTTGTAATGTAAAGTAATTGAATGTGCTGCTCgctaatcacatttatttattgtcTTTTGTTATGTCCTTTTAAACATGCTGTTAGGTAGTGATGGGCACTCATATGGAACATCTATATCGACGTCAGTTGTATTGTTTCTAACCTACCCAACCAGTTGTATTACAATATGAAGCTTGTTGATGGCCATCAGCAGGCAGCAGTAAGCTAAGTTGAGAGCCTGTGTAAGGGTGTTGTGCCTGTAGGAACAGTGATGTGTGGTCTTTTACATACAGTAATGTTAACAGCAACGATAAGGCCATATCAAGAAATGCCTTGTCATATTGATATCAAGTTATATCATATTGAATTATCGATATTGATGCCCACCATTTCTGTCCTTCTTTAcaaagttatttatttatttaaaaacttTGTAATACTTTTTAGATTATTTACAAAATAGAGAAATGTAATATTTAGTTGATTCATTGAAACTGCCCTTAATGTTGACCTGTATTGATTAaacacggggcggcagggtagcctagtggttagagcattggactagtaaccggaaggttgcgagttcaaacccccgagctgacaaggtacaaatctgtc
>TU1297671
GAAAAACCACTTGAGCTGGTAAACTACAGACTGCAGCTATTTGAATTGCAAACGTAAGCAAGAAGATGAACAGAATGGCAAGAAGTGATCATCCAACTCATTCACATTTGGTGGAAGATGAGACATGGTTCGGACAGCCAGCTGATCTGAGGATAGTTCTGTTGGGGAAGACTGGAGCAGGGAAGAGTGCAACCGGAAACACCATCctgaggagagagtggtttactTCTGAGTCAAGTCCAAATCCAGTGACTGAAAAGTGTGAGAAACAAAGTGGAGTGGTGGATGGGAGGAAGATTTATGTCATCGACACTCCTGGGATCGATGACACATCATTGACAGACACATATTTGATTTATAAAATATGGAAACAGTTTCGGAGAACAGATAAAGTCGAAATAGAGAAATCCATCAAGATGTCAGTTCCAGGACCCCATGTGTTTCTGCTGGTGATCAGACTGGATAGATACACAGAGGAGCAAAGAAAAGCAGTGAAGTACATCCAGGACAACT

Function

NR:

description
GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939939.1 False 1789 mRNA 0.40 2 5216411 5244436
XM_036939938.1 False 1830 mRNA 0.40 3 5216411 5244441
TU1297671 True 513 TUCP 0.43 3 5217691 5244404

Neighbor

gene id symbol gene type direction distance location
LOC118938162 LOC106592646 coding downstream 4902 5200479 ~ 5211509 (-)
LOC118938161 LOC106592320 coding downstream 38494 5168329 ~ 5177917 (-)
LOC118938159 LOC106592320 coding downstream 61311 5149240 ~ 5155100 (-)
LOC110485440 LOC106597237 coding downstream 74788 5138584 ~ 5141623 (-)
LOC110485443 LOC106592430 coding downstream 74832 5128224 ~ 5141579 (-)
LOC110516762 LOC106592646 coding upstream 1005 5245446 ~ 5266487 (-)
LOC110485445 LOC106564237 coding upstream 34505 5278946 ~ 5280863 (-)
LOC110517601 tmed1 coding upstream 340613 5585054 ~ 5595560 (-)
LOC110516670 LOC106592431 coding upstream 382170 5626611 ~ 5629846 (-)
LOC118938515 LOC106592948 coding upstream 426996 5671437 ~ 5678473 (-)
G1138572 NA non-coding downstream 26040 5172449 ~ 5190371 (-)
G1138620 NA non-coding downstream 69775 5146263 ~ 5146636 (-)
G1138619 NA non-coding downstream 70261 5144597 ~ 5146150 (-)
G1138574 NA non-coding downstream 82553 5133317 ~ 5133858 (-)
G1138566 NA non-coding downstream 91587 5112352 ~ 5124824 (-)
G1138632 NA non-coding upstream 5821 5250262 ~ 5251136 (-)
G1138571 NA non-coding upstream 13656 5258097 ~ 5258533 (-)
G1138634 NA non-coding upstream 28943 5273384 ~ 5273692 (-)
G1138637 NA non-coding upstream 32608 5277049 ~ 5277273 (-)
G1138640 NA non-coding upstream 42932 5287373 ~ 5287611 (-)
G1138568 NA other downstream 53457 5158165 ~ 5162954 (-)
G1138232 NA other downstream 596547 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 795151 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1450595 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1483111 3731621 ~ 3733300 (-)
LOC110512654 LOC106592307 other upstream 800416 6044857 ~ 6058622 (-)
G1139916 NA other upstream 847918 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1361878 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1453941 6698319 ~ 6717102 (-)

Expression


Co-expression Network