LOC110516762 (LOC106592646)


Basic Information

Item Value
gene id LOC110516762
gene name LOC106592646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5245446 ~ 5266487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939937.1
cacacacacacacacacacacgtttcttgGAAACGTCTCTGTTCTGGTAAAACAGCAGTAGAGGGTGTAGTCACTAGTTTGAAGCCAACAGAAGAGTTGGATCTGAGATCAATCTTTGTCTTCTCCTCCAACTAACCAGAGTTTCATTGAGGACTGGAGCTGATGAACTACAGAACACAGCTTTTCTAAGAACATCcaggaagaagagaagaaagaCGAGTTTCATTGAGGACTGGAGCTGATGAACTACAGAACACAGCTTTTCTAAGAACATCcaggaagaagagaagaaagaCGAGTTTCATTGAGGACTGGAGCTGATGAACTACAGAACACAGCTTTTCTAAGAACATCcaggaagaagagaagaaagaCGATATGGGACGAAGAAGAGGAGGGACTCTGAAGATTCTGTTACTGTTGACACTCTGTCTGCATGCCTTCACTGGTCAATGCCAagATTCAGGGCAGCCCTCTGACCTGAGGATAGTTCTGATAGGGAAGACTGGATCAGGGAAGAGTTCAACAGGAAACACCATCCTGGGGAGAAAGGTGTTTAGAGAAGACCTCTCCCCTGAGTCTGTCACTGTTCACTGTGAGAAACAGAGTGGAGTGGTGGATGGGAGGAAGATTGATGTCATCGACACCCCGGGGCTCTATGACACAACAATGTCTAAAGAAGAGATGAAAAGTGAGATAGAAAAGGCCATCTACATGTCAGTCCCAGGACCTCACGCCTTCCTGCTGGTGATCAGACTGGGGAGgttcacagaggaggagaggaacactgTGAAGTGGATCCAGGAGAACTTTGGAGAAGAAGCATCAATGTACACCATCATTCTGTTCACCGGAGGAGACCAGCTGGAGGACAAATCAATGGTGGACTTTCTAAGTGAGAGTGAGGAGCTTATGAAACTCGTCAAGGTTTTTAAGGGCAGAAATCATGTCTTCAATAATAACAAGAAGAATGACAACAATCAGGTCCCAGAGCTGCTGAAGAAGATAGAGGAGATGGTGAAGAAGAATGGAGGACAACACTACACCAATGAGATGTACCAGGAGGTCCAGAGGAAGatcgaagaggaggaggagaggaagagacaggagaagaaggagagagaggaggaggcgaaGAAGAAACAAGAGGAGGAGATCAGAAAACGGGAAGAGAAGgcgagagaggtggagaggaagagacaggaggagaagaagaaacaaGAGGAGGAGATCAGAAAATGGgtagagaaggtgagagaggaggagaggaagagacaggaggaggagaagagaaaggaggaTAAGAAGAAACATGAGGAGGAGATCAGAAAACAGGTAGCAAAGGCGAGAGAGGCGGAGAGGATGAGACAGCAGAGGACGAGGAAGTCGTCGTCAAATGGCTTATTGGGATTGTTAGCAACTGTTTTCACAGCGGTGGTAGCAGGACCATTAGCAATTCCAGTTGGAGCTGCTGTATTTGCAAATGAAGTAGCTGAACATTTAGACGACTCCGATtaaatgaggaagaggagggagtgtgAAGTACCACTCTCTTCCTCATCTTAATGtcaagtagtagcagtagaataTCTTAATACTGTACAATGACAACCATCAGTGTTTGTAGCAGTAGATTAATTATGTACAATGACAACCATCAGGGATTGTTCATCACTTTCTAATATTATCAGTTATTTACCATGTTATTTACCATTTACCATGAGTCTTAGggataataacatactgtaggatGACATTTATAATTCAACAAGAACAAACAGACAGAAAAAATCTGAAATCATGTTTCATTAACTCAGAGATAGTTAATAAGTTAGAATGGGTAAAGAGATTCTAGGTATCTAGATATCTACAGTATTGATGTATCTACCttccctccctggtctgtgttctctctctaccctccctttctggtctgtgttctctctctagtatctctctaccctctctttctggtctgtgtgctctctctagcctctctaccctccctttctggtctgtgtgctctctctaccctccctccctggtctgtgttctccctctatccttcctccctggtctgtgttctccctctagccttcctccctggtctgtgttctccctctatccttcctccctggtctgtgttctccctctagccttcctccctggtctgtgttctccctctatcctccctccctggtgtgtgttctccctctaccctgcctccctggtgtgtgttctccctctaccctccctccttggtctgtgttctctctctacccttcctccctggtctgtgttctccctctaccctccctccctggtctgtgttctccctctttcctctatctaccctccctccctggtgtgTGTACTCCCTCTAGTGTTAAACACCACATGATTAACACAGTGAGTAATGTTGTAATGGACTGTACGTCACAACTGTACTTCTACTGTAATTCATTACTGTATTTCTACTGTAATTCATTACTGTATTTCTACTGTAATTCATTACTGTATTTCTACTGTACCTCATTACTGTATTTCTACTGTAATTCATTACTGTATTTCTACTGTACTTCATTACTGTATTTCTGCTGTACTTCATTACTGTATTTCTGCTGTACTTCATTTCTTTATTTCTGCTGTACTTCATTACTGTATTTCTGCTGTACTTCATTACTGTATTTCTACTGTAATTCATTACTGTATTTCTACTGTAATTCATTACTGTATTTCTGCTGTACCTCATTACTGTATTTCTACTGTACTTGGGAAAAGAACATTACTTTAACAATTACAAAGAGGTATTTTGTATGTGCTTTGTCATCATACCGACAACATCAAAATAGCCTTTCAAGACCGAAGTCAGCAGGACTTTGAGCAGCCAGACTTAGTATCAGCCAGACTTGTTGCTGGGTTACAGGGTTAAATAGCCATTCAACCAGTTTTGAAAAGAGAAAACTGTGTTTTAGAACTAGAAGAGACTCCACTATCAACATGAGAAATTATGGTCAAccgtatagacacacacagactgagatTCAATCCAATACTGTATAGACACACAGACTGGCATtcgtaaccgaaaggtcgctagtTCAACTCTAGGAGCAGACAAGGTGAAACATTTGTccgtgtgcccttgagcaaggcatttaacctcAATGGCTCCAGGGATgttgttgataatgtctgaccctgtctAAAGACTCCAGCTCTCTGTGggtgttgataatgtctgacccggTCTAAAGACCCCAGCTCTCTGCGggtgttgataatgtctgaccctgtctAAAGACCCCAGCTCTCTGTGggtgttgataatgtctgacccggTCTAAAGACCCCAGCTCTCTGTGggtgttgataatgtctgacccggTCTAAAGACCCCAGCTCTCTGCGggtgttgataatgtctgaccctgtctAAAGACCCCAGCTCTCTGTGGGTGTTGATAATGTCTGTCCCTGTCTAAAGACCCCAGCTCTCTGTGGGTGTTGGGATATGTGAGaaacacatgtacaagtgtgaaacaggacaaataacAGCAGCTACTATAGTCACCATCTAGTGAGTCTGACCTGAAATAACCCCTGAACATCTCATGACTGTTTTAATCATGGCAGTTATTTACGGTTTCTCTTTCCCTGTTTGGAAACATGCTGAACTAGTTCATCATCATTCCATTGGATAATAATGGACATGTGGTAACATGCAGAACTAGTTCATCATCGTTCCATTGGATAATAATAGACATGGTAAAAGATCATGTTTCTAAAGACACATCAGCACATGTAGGATGAGTCACATGTAGGATGAGTCATTAATATTCTATTAATAAAACTACTTTCTACCAGGACCCTAGAGCACTACCAGGGCAAGTGTCCCAtgcaataaggggatctgctgtacccaTGTTATGTCGGAAAAGTCAGTTATGAATTATTCTGTCCTGGTTAAAAACAAGTTatcatccaataggctttgatAAAATGTCCAATATCCTCACTCACATgtaaattctgtaagagtaatgtaTATGTCGATTGTTTGACggtccgaccgcattctgtccctTATCAATACAAATGTTGGTGCCAgcgagaatgacataagaaagtagtcaagacgacaaGCTTAATTAAACCTCCGTCATGTATATCTAAACACAGAATTATTATCTCCCACTATAATAATAGAGTCTTGTATTGCCGGTAGACTTGATCAATTATTACAATTATTTTCAAA

Function

NR:

description
GTPase IMAP family member 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939937.1 True 4258 mRNA 0.43 5 5245446 5266487

Neighbor

gene id symbol gene type direction distance location
LOC118936520 NA coding downstream 1005 5216411 ~ 5244441 (-)
LOC118938162 LOC106592646 coding downstream 33937 5200479 ~ 5211509 (-)
LOC118938161 LOC106592320 coding downstream 67529 5168329 ~ 5177917 (-)
LOC118938159 LOC106592320 coding downstream 90346 5149240 ~ 5155100 (-)
LOC110485440 LOC106597237 coding downstream 103823 5138584 ~ 5141623 (-)
LOC110485445 LOC106564237 coding upstream 12459 5278946 ~ 5280863 (-)
LOC110517601 tmed1 coding upstream 318567 5585054 ~ 5595560 (-)
LOC110516670 LOC106592431 coding upstream 360124 5626611 ~ 5629846 (-)
LOC118938515 LOC106592948 coding upstream 404950 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 412677 5679164 ~ 5756340 (-)
G1138628 NA non-coding downstream 17356 5222756 ~ 5228090 (-)
G1138572 NA non-coding downstream 55075 5172449 ~ 5190371 (-)
G1138620 NA non-coding downstream 98810 5146263 ~ 5146636 (-)
G1138619 NA non-coding downstream 99296 5144597 ~ 5146150 (-)
G1138574 NA non-coding downstream 111588 5133317 ~ 5133858 (-)
G1138634 NA non-coding upstream 6897 5273384 ~ 5273692 (-)
G1138637 NA non-coding upstream 10562 5277049 ~ 5277273 (-)
G1138640 NA non-coding upstream 20886 5287373 ~ 5287611 (-)
G1138645 NA non-coding upstream 33364 5299851 ~ 5301300 (-)
G1138655 NA non-coding upstream 55814 5322301 ~ 5329724 (-)
G1138568 NA other downstream 82492 5158165 ~ 5162954 (-)
G1138232 NA other downstream 625582 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 824186 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1479630 3765282 ~ 3765816 (-)
LOC110512654 LOC106592307 other upstream 778370 6044857 ~ 6058622 (-)
G1139916 NA other upstream 825872 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1339832 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1431895 6698319 ~ 6717102 (-)

Expression


Co-expression Network