LOC110485445 (LOC106564237)


Basic Information

Item Value
gene id LOC110485445
gene name LOC106564237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5278946 ~ 5280863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556513.2
CACACAGGTGTCACGAGGACCACATGTAGTTTCCAAACCTCACAGGCATCCATACTGCCCTACAGGCTAGTATAGGCTACATTTCACATGCCACTTAAGTGAGACAACATTATGGAGGTAAAAGGTAACCCATCAACTTGCTCACCGACCACCACAACCAACATTCCCGTCGCCCATCAGCGGGCTGAACCTTCTCAGTTCCCCGGGACCAGAGCCCTGAGCCCCGGCTCCTCCAAGGTCCTGCTGGCATACAAAAACGTAACCCAGCACCTGAACTCACCGGGGCTCAAAGCCAGCATGGGTTTCCTTAAAATGGTCACGTCTCAGTGGAAGCACCAGGAAAAGAAGGGGAGGGTGGTGCGGTCCCAAAGCACAGGTAGCTGGCTTCCACCTCCCTCCGATGGCCACTCTTGCAAGAGGTCGCCACTGGACCAGCTATCTGCTCTGGTTCTCCAGGGGCAGATTCGGTTCGGTGAGGACGACCCAAGGCTCGCCCAGGACTCTCCGCAGGACCCGCTGAGCTCCACCAAGCCGCAGAACTGCAGGCGTATCGTGGTTCTGGGTGCGCCCCGGGTGGGCAAGACTTCAATCTTGCGACGGTACCTCTGGGACGGCTTCGTGGAGGAGTACCAGCCCACCTCCGAGGATTTCCTCCGGAAAATGTTCCACATCCGCGGGGAGACGTATCAGATCGACGTACTGGACGCCTCCGGAGAGAGGAGCTTCCCGGCGAAACGCAGGCTCTCCATACTAACCGGTGACATATTCCTTCTGGTCTTCACCCTGGACGACCGGAGCTCGTTCGAGGAGGTGTGTGCCCTGCGCACTGAGATCCTCGCGGCCAAAACCAAGCTCCTCAAGCCCACCAGGCCGGGCCAGAGCGCACGGGTCCCCACGGTAGTCTGCGCTAACAAGGTGGACTTGTCCCCAGCGGAGAGAGTACTTTCCCGGGCAGAGGTGCTCCGATCCCTCGGTGAGGACTGCGCCTACTTCGAGACCTCCGCCAAAGACCGCACTAATCTGGAGGAGGTATTCGAGGCTCTGGCTAAACGGGGCGGGTTGCCAACGGAAACTAGTCCGTCGCAGCACCGCAAAGTTTCGATTCGGTCGTACCAGGCGCTGAAAGAGGGCAGAGCGGCCGGGAGAGGGAGCCAGGCGACCGGTTGTAAGGCTCCGTGTGGGGCGCTGTATCCGCTCGCTCGACGGCCGAGTTTCAGCACTGATCTCCGTCAAGTCCTCGGCCCCAACTCCGCACGGAATCCGGGCAAGCCGCTGGAGAAGTGTCAGATTCAGTGAAGGAGCCAAAGACAGACTGGACTGGTTTATAAGGGTATGTGGAGCGAGGAAAAACAATAATGTTGGATTTCCACAAATTCATTCTGCTAAATGTAGATATGACTGTGAATAGTATTTGCACCAGGGACTTGAACACTACTAATAGCCTACCAAATGTGCAGAAGTTGTGCAATTGTGGGTCTCAATCTaatgtgaaatatatatttttgaaatgaataaaaaaaacatttttgatcAT

Function

NR:

description
GTP-binding protein Rhes-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556513.2 True 1534 mRNA 0.56 2 5278946 5280863

Neighbor

gene id symbol gene type direction distance location
LOC110516762 LOC106592646 coding downstream 12459 5245446 ~ 5266487 (-)
LOC118936520 NA coding downstream 34505 5216411 ~ 5244441 (-)
LOC118938162 LOC106592646 coding downstream 67437 5200479 ~ 5211509 (-)
LOC118938161 LOC106592320 coding downstream 101029 5168329 ~ 5177917 (-)
LOC118938159 LOC106592320 coding downstream 123846 5149240 ~ 5155100 (-)
LOC110517601 tmed1 coding upstream 304191 5585054 ~ 5595560 (-)
LOC110516670 LOC106592431 coding upstream 345748 5626611 ~ 5629846 (-)
LOC118938515 LOC106592948 coding upstream 390574 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 398301 5679164 ~ 5756340 (-)
LOC110485432 LOC106593320 coding upstream 475870 5756733 ~ 5783389 (-)
G1138637 NA non-coding downstream 1673 5277049 ~ 5277273 (-)
G1138634 NA non-coding downstream 5254 5273384 ~ 5273692 (-)
G1138571 NA non-coding downstream 20413 5258097 ~ 5258533 (-)
G1138632 NA non-coding downstream 27810 5250262 ~ 5251136 (-)
G1138628 NA non-coding downstream 50856 5222756 ~ 5228090 (-)
G1138640 NA non-coding upstream 6510 5287373 ~ 5287611 (-)
G1138645 NA non-coding upstream 18988 5299851 ~ 5301300 (-)
G1138655 NA non-coding upstream 41438 5322301 ~ 5329724 (-)
G1138663 NA non-coding upstream 61115 5341978 ~ 5342438 (-)
G1138664 NA non-coding upstream 61785 5342648 ~ 5343078 (-)
G1138553 LOC106592646 other downstream 16433 5201055 ~ 5262513 (-)
G1138568 NA other downstream 115992 5158165 ~ 5162954 (-)
G1138232 NA other downstream 659082 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 857686 4394745 ~ 4421260 (-)
LOC110512654 LOC106592307 other upstream 763994 6044857 ~ 6058622 (-)
G1139916 NA other upstream 811496 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1325456 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1417519 6698319 ~ 6717102 (-)

Expression


Co-expression Network