LOC110517601 (tmed1)


Basic Information

Item Value
gene id LOC110517601
gene name tmed1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5585054 ~ 5595560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939955.1
CGGCGATTGGTCCCGCAGTGAATCAGTCATACGGATATTCTAGCCAATCGTCTGATCGGAAAAGTTCAACAGATGTTGCGGAACATAGAAACACGCTATtggaagttagctagctagccaggatGATAACGTAGCTAGCTATCATATTTCAGCACATCGAGGAAGCTAATTAATTTATCGCCATGGACACACGTCGGACAGCAGGACGAGGCAGCACCACATGTGTTTTCATGGCGTTAGTTGTAGCGACGTGTCTTGAAACCATTCGTGCTTTCGGCCACAGTCAAGACAGCGAATTCACCTTTATCTTACCAGCCGGAAGAACCGAGTGCTTTTTCCAAACGGCTGCGAAGAACGTTACCATGGAAGTGGAGTATCAGGTGATAGCCGGTGCAGGTATGGATGTAGATTtcaccattctctctcctcacGGATTCCAGCTCATCTCTGAGTTCCGCCGCTCAGACGGAGTCCACATTGTGGAACCCACGGAGGAAGGAGACTACCAGATCTGTTTTGACAACAGCTTCAGCCGCTTCTCTGAGAAGATGGTCTTCTTTGAGGTCATCATCGAGGGACAGCCGGGCGACGTGGGCGGGGATGACGAGTGGGCGGGGCTTGGAGAGCCTGAGAGCCTATTGGAGTACAAGCTGGAGGACATCAGGgaGTCAATAGACTCAGTACACCGTCGGCTAGAGAGAAGTCGTCAGATGCAGACGGTACTGAGAGCGTTTGAGGCCAGGGACCGTAACCTGCTAGAAGACAACCTGTGGAGGGTCTCCTTCTGGTCCTGTACCAGTCTCATTGTAATGCTGGGGGTCGCACTAACTCAGGTCTATACCGTCCGCAGACTGTTTGACGATAAGAGGCGTGTCTGTACATAAAGACACGCCCACTCCGCCACCTCACAGCCAAtcaggggaagagaagagagaagacgaGGAGGAAGCAGAAGAGTAAATGATCTGCGTCACAAATTGCACCTTATTCCTTATCTAGATCCCA
>XM_036939954.1
GGCGATTGGTCCCGCAGTGAATCAGTCATACGGATATTCTAGCCAATCGTCTGATCGGAAAAGTTCAACAGATGTTGCGGAACATAGAAACACGCTATtggaagttagctagctagccaggatGATAACGTAGCTAGCTATCATATTTCAGCACATCGAGGAAGCTAATTAATTTATCGCCATGGACACACGTCGGACAGCAGGACGAGGCAGCACCACATGTGTTTTCATGGCGTTAGTTGTAGCGACGTGTCTTGAAACCATTCGTGCTTTCGGCCACAGTCAAGACAGCGAATTCACCTTTATCTTACCAGCCGGAAGAACCGAGTGCTTTTTCCAAACGGCTGCGAAGAACGTTACCATGGAAGTGGAGTATCAGGTGATAGCCGGTGCAGGTATGGATGTAGATTtcaccattctctctcctcacGGATTCCAGCTCATCTCTGAGTTCCGCCGCTCAGACGGAGTCCACATTGTGGAACCCACGGAGGAAGGAGACTACCAGATCTGTTTTGACAACAGCTTCAGCCGCTTCTCTGAGAAGATGGTCTTCTTTGAGGTCATCATCGAGGGACAGCCGGGCGACGTGGGCGGGGATGACGAGTGGGCGGGGCTTGGAGAGCCTGAGAGCCTATTGGAGTACAAGCTGGAGGACATCAGGgaGTCAATAGACTCAGTACACCGTCGGCTAGAGAGAAGTCGTCAGATGCAGACGGTACTGAGAGCGTTTGAGGCCAGGGACCGTAACCTGCTAGAAGACAACCTGTGGAGGGTCTCCTTCTGGTCCTGTACCAGTCTCATTGTAATGCTGGGGGTCGCACTAACTCAGGTCTATACCGTCCGCAGACTGTTTGACGATAAGAGGCGTGTCTGTACATAAAGACACGCCCACTCCGCCACCTCACAGCCACCTGTACAGAGGCGTGTCTGTACATAAAGACACGCCCACTCCGCCACCTCACA

Function

symbol description
tmed1 Predicted to enable signaling receptor binding activity. Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Located in Golgi apparatus; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
transmembrane emp24 domain-containing protein 1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20348 TMED1; p24 family protein gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939955.1 False 1005 mRNA 0.51 7 5585054 5595560
XM_036939954.1 True 966 mRNA 0.52 6 5585149 5595559

Neighbor

gene id symbol gene type direction distance location
LOC110485445 LOC106564237 coding downstream 304191 5278946 ~ 5280863 (-)
LOC110516762 LOC106592646 coding downstream 318567 5245446 ~ 5266487 (-)
LOC118936520 NA coding downstream 340613 5216411 ~ 5244441 (-)
LOC118938162 LOC106592646 coding downstream 373545 5200479 ~ 5211509 (-)
LOC118938161 LOC106592320 coding downstream 407137 5168329 ~ 5177917 (-)
LOC110516670 LOC106592431 coding upstream 31051 5626611 ~ 5629846 (-)
LOC118938515 LOC106592948 coding upstream 75877 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 83604 5679164 ~ 5756340 (-)
LOC110485432 LOC106593320 coding upstream 161173 5756733 ~ 5783389 (-)
nxnl1 LOC106592756 coding upstream 198749 5794309 ~ 5799274 (-)
G1139764 NA non-coding downstream 29043 5555447 ~ 5556011 (-)
G1139756 NA non-coding downstream 46429 5538072 ~ 5538625 (-)
G1139726 LOC106592593 non-coding downstream 62255 5518703 ~ 5522799 (-)
G1139725 NA non-coding downstream 66565 5517996 ~ 5518489 (-)
G1138753 NA non-coding downstream 104771 5480066 ~ 5480283 (-)
G1139785 NA non-coding upstream 28562 5624122 ~ 5624323 (-)
G1139790 NA non-coding upstream 48185 5643745 ~ 5643960 (-)
G1139791 NA non-coding upstream 49183 5644743 ~ 5645043 (-)
G1139770 NA non-coding upstream 64696 5660256 ~ 5661215 (-)
G1139797 NA non-coding upstream 65844 5661404 ~ 5664528 (-)
G1138553 LOC106592646 other downstream 322541 5201055 ~ 5262513 (-)
G1138568 NA other downstream 422100 5158165 ~ 5162954 (-)
G1138232 NA other downstream 965190 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 1163794 4394745 ~ 4421260 (-)
LOC110512654 LOC106592307 other upstream 449297 6044857 ~ 6058622 (-)
G1139916 NA other upstream 496799 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1010759 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1102822 6698319 ~ 6717102 (-)

Expression


Co-expression Network