LOC110516670 (LOC106592431)


Basic Information

Item Value
gene id LOC110516670
gene name LOC106592431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5626611 ~ 5629846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942604.1
ctctctcatttctttacccattctctctctcccctttctctctctctctcttgtttcccACCGTACTGCTCCGCTTGCGCAAAGCGAAAGCAGCAGCGGAAAGTCTCAGGCAGCTCCTGCTCTGTTCACGCATCACTTCACAACGTGTCAGCAacggagaggggaaggaggagacgaGAGAGTGAGGGGGCGAGGGAAACCCGAACCCATGACTTCCGCGTAttttcctctctctggtctcgcATCTCAAGCCACCCAGAGTGGTATAAAAATACCTGGGATATGCTGCTTCATTTCAAACTCGGAGCAGGAACTTAATAGTACATATGCAGCCCAATCCAGTTCGATTTGGATATTAAAGAATTTACCGGTAAACCGAAGTCATAACGTGGTTAGCAAACGTCCGAAGAAGGATTTGACATGTTTTGGGGTCCTCTTGTTTTCTTGCAGTGGACAGTTCTTCTGGCCCGGTTCTTCTGACCGACTCGTAAAACGGATAATTCTGTAGAGCTTCTGGGATCGACACACTCACCCACTCCAGTTTTCTTCTGGAACTCTGTGTGATCACCGGGAACCCGAGATGGATGTGGAATCTCAGAGGAGCGCACGCCCCCGCGGACGGTGCCTGGACGTTTTCTTGGTCGGTTCTGTCGTTTTGCTCTTCCTGGCGGTGGCGACAGTTGTTGTCATGGGAACTTTGGCTCTTGTGGAGCTACGGTCAGAGATCGGGGTTCAACCTTATGTTGTGGATATGCAAGGTACATCGGAGACGCACCATGGCGTGCCCCGTCCCAAGCCCGCGTACAAGAAGCAGAGCTTGGCCTACGTGCAGCTCACCTCCGCCACGATAGAGAACAGCACAATGTCCTGGTCCCAGGTCGACCATGGACAGGAGTCCTCTGTTGGAGATCTGTACGAATACAACCTTCAGCAACATACATTACAAACCAAGCAGGATGGCTTCTACTTCCTGTACCTGGACCTCCAGCTCACCTGTACCGCCAAATGTGGGCGGGGCATCCTCGTCGTCCAGCTTGCAAGTCACGGCGACCCAAAGCTCACCTGCCAGGTGGAGCTCCCAGAGTGGTCAGAGTCAAACCCTGTGACAACGGTAACCAGGAAGTGCTGGAAGGTGACACGACTGGACTCAAAGAGCCGGTTGATAGGCCATATGGTGGTGCCGAAAGCGCAGGACACGTTCTGGAAACTGGACGGGAACGGATCCGGAATGGGAGTTTTCTTAGTGGCTTGATGTGGGCCACGTTCAGTACGGTCAACTTTGTGAAACTTTGCAGATAGAGATGCCGTGAACAGAGCCGACGTTATTCCTTCGTTAAGATGTCAGGGAGGCATGAAGTTCTACATTGCTACTATCTGAACATTCCCGAAACGTTGCGTCCTACTGAACGCACCCCTGGGATGGAAGTTAGGGCTCCGCCACAGACGAAGGGAAGGAGACGAGAAAAGGAAGCGAGCCAAGGGTACTGAGATGCACCCCATCTAGGAGAACTTGCAGACAGAGAGAGTCGTCCCACCATACACTGTTTGTGGACTTTGACCTCTGTCGCTCAGGGCATCTCCATGGAAACAATTTAAACTAAACAATTCAGGTCTATTTATAtgaatatttattgaatgtatatatatttaatgtataaacgtgtatttatatatttgtacTCAGGGTTACAATGTGTTGTTTATTGTCATTTGTAGATGCCACTACGTTGGTGCT

Function

NR:

description
uncharacterized protein LOC110516670

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942604.1 True 1735 mRNA 0.50 3 5626611 5629846

Neighbor

gene id symbol gene type direction distance location
LOC110517601 tmed1 coding downstream 31051 5585054 ~ 5595560 (-)
LOC110485445 LOC106564237 coding downstream 345748 5278946 ~ 5280863 (-)
LOC110516762 LOC106592646 coding downstream 360124 5245446 ~ 5266487 (-)
LOC118936520 NA coding downstream 382170 5216411 ~ 5244441 (-)
LOC118938162 LOC106592646 coding downstream 415102 5200479 ~ 5211509 (-)
LOC118938515 LOC106592948 coding upstream 41591 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 49318 5679164 ~ 5756340 (-)
LOC110485432 LOC106593320 coding upstream 126887 5756733 ~ 5783389 (-)
nxnl1 LOC106592756 coding upstream 164463 5794309 ~ 5799274 (-)
LOC110519495 LOC106566240 coding upstream 198554 5828400 ~ 6076863 (-)
G1139785 NA non-coding downstream 2288 5624122 ~ 5624323 (-)
G1139768 NA non-coding downstream 39147 5586559 ~ 5587464 (-)
G1139764 NA non-coding downstream 70600 5555447 ~ 5556011 (-)
G1139756 NA non-coding downstream 87986 5538072 ~ 5538625 (-)
G1139726 LOC106592593 non-coding downstream 103812 5518703 ~ 5522799 (-)
G1139790 NA non-coding upstream 13899 5643745 ~ 5643960 (-)
G1139791 NA non-coding upstream 14897 5644743 ~ 5645043 (-)
G1139770 NA non-coding upstream 30410 5660256 ~ 5661215 (-)
G1139797 NA non-coding upstream 31558 5661404 ~ 5664528 (-)
G1139798 NA non-coding upstream 35170 5665016 ~ 5665341 (-)
G1138553 LOC106592646 other downstream 364098 5201055 ~ 5262513 (-)
G1138568 NA other downstream 463657 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1006747 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 1205351 4394745 ~ 4421260 (-)
LOC110512654 LOC106592307 other upstream 415011 6044857 ~ 6058622 (-)
G1139916 NA other upstream 462513 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 976473 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1068536 6698319 ~ 6717102 (-)

Expression


Co-expression Network