LOC110487505 (LOC106593267)


Basic Information

Item Value
gene id LOC110487505
gene name LOC106593267
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5679164 ~ 5756340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939965.1
CCGTTTTAAATAATAACTTTGTGTCATAGACTACAATTAGAGCCTATACTGTCTGATTACCACTATGCCAATGTGAAATTGTAGATTTGTTGGTTTGATtcaaataagagagagagagagagagagagagagagagagagagcgggagagagagcgagcgagcgagacagagctaGACGAGGCCGCGTTTAACGGAAATCGGTGCCATTGAGAAACAGTGCGTACGTTACTTTCCGCTATCACGCTAGGGTATTAACGATTCCATACATTCGATCGTCGGTCATATCAACTCTATTCGGTCGTGAGGTTTATGGAGCATCACGGACGATCAGGTCTAGATTATTTAAATGCTCTGGATAATATCTATCCGTGTGTAATCTTGGAGCCCTCCGCATTCCAGTCTAGGGAGAGGAAGGATGCTGTAGCCTACCAAGCTATGCGCTACTGAAGTGTTTTACATTGGCCAATAGCCCAGCCTCATCAGTGCGACTGCATTTTGACTGGACTCGACGATAcatcatataatataatatgacttCCATTTGCTATGTGTTATATCTGTACGTTTGTATTTGTCATCCAACTGGACTAGCCTGTAGAATAGGCTACAGTCATCGCCATAGGAACCCGAGGGAGATATCATTATAATAAGCTACTTTAGTGCAACGTGACGTGCAACAGCGGGAAAGACGGTCGAGTCCTATTAGGTGAGATTGAGCGTATGTGTGACGCTAAAGTGGCGTGTGTTTCCTCATGTGGAGTGTTTTTCGTCGAGGAGGATACGCTCGCGTTGTCGGATAATTCCCACGTCGAGGATCGGTTGACTCCCTTCTTTATTCcatctcgctctcacacacaccgtGCGCGTGGCCTCGCCCGGGAGCAACCGGGTCGCCTATTACACGGGCTTATTTTTACTGCATCggcaagaaggagagggagagagaaccgaGGATAAAACAACGGGAGGGAAGGATTGGGGGAccggaggagagaagaggagaggcggGATGAAGGAGGAGACGCAGTGAacgacagaggaggaggagggagactcgaGCGTTCGAGgCTCTCCTGACGTGCCTGGTGGTATCGCGTCCTGACTCTCCCCCCAGTCATGGCTCTGTCACTGTGGTTCCTGTTTGTGTCTGTCACCACCCTAACTCACGTTGCCCCCTCTGGCCAAGCTATGTCCAGAGCTGCGATTCCCTTCGGCATCCTGAGGAGGGAGCTAGCGTGTGAGGGCTACCCTATCGAGCTGCGCTGTCCAgGAAGTGACGTCATAATGATTGAGACAGCAAACTACGGACGCACGGACGATAAGATCTGTGACGCGGACCAATTTCAGATGGAGAACACACAGTGTTACCTCCCAGACGCACTCAAGATCATGGCCcagaggtgTAACAACAGGACCCAGTGTGTAGTGATAGCAGGAGTAGATGTGTTTCCAGACCCCTGTCCTGGTACATACAAATACCTGGAGATACAGTATGAATGTGTTCCTTAcaTAGAAGTGGACCAAAAAGtcTTTGTGTGTCCTGGTTCTCTCCTGAGCGTTCAACCGGCTACTTCCTTATTGGAGGCGGAGCATCAATCTGGGGCGTGGTGTAAGGACCCGTTGCAGGCTGCTGATAGGCTGTATGTCATGCCCTGGACACCCTATAGGACGGAAGTTCTGTATGAGTATGCTTCATGGGACGACTACAGGCAGAACAGAGTCACCACCACTTACAAGCTGCCGAACCGCGTCGACGGTACAGGCTTCGTGGTCTATGATGGAGCCGTGTTCTACAACAAGGAACGCACGCGCAACCTGGTCAAGTACGACCTCCGCACGCGCATTAagaGCGGCGAGGCGGTGGTGTTGAACGCTAACTACCACGACACTTCTCCGTATCGGTGGGGCGGGAAGAGCGATATCGACCTCGCTGTGGATGAGAACGGACTGTGGGTCATCTACTCAACTGAAGCCAACAATGGACGTATAGTTGTCAgtcagGTAAACCCTTACACCCTGCGTTTCGAGGGCACGTGGGCGACCAGCTTCGACAAGCGCGGGGCGAGCAACGCCTTCATGGCGTGCGGCGTGCTGTACGCGGTGCGCTCCGTCTTCCAAGACGacgagggacagacagacagaggaggaggaggtggaggggataTGGTGTTATATGCGTTTGACACCAGTAGAGGGCGAGAGGTGCCGGTCCAGATCCCCTTCCCTAACCCCTACCAGTATATATCATCTATAGACTACAACCCACGGGACAACCAGCTGTATGTGTGGAATAACTACTACGTGCTGAGATACCCTCTGCAGTTCAGACCGCCCCAGCCTACCAAAGGTGTGTGTGCCCGGGGGAAgggcagggtgtgtgtggggggcagtTTGCTAACCATAATGATAATATATTTGACCCCTCCCTCCCCATGCCTCTCTCCTCCAGGTCCTCTCTCATCTCTAATGACTACAGTGGGGTCCTACACAGCCACCGTAGCACTGACCCCAGTACGACCTTCAGCCTCCAATCCCATCGGGGTCATCAACCGGAGTCCGGACTTGCGGCCAATCACGGCCATGGTCccgctgaccccccaccccccccaccgtGCCCCCATCGCCCCGGGGGGGTCCTACGGGAGGCAGGTTGGGGTGTGTGAGGGGAGGGTGACCAGAGGGGTACAGTGGCCCCCTACACCTAaaggagagatggtagagagaccATGTCCCAAAGGATcactggGTATTGCATCGTACCAGTGTGTGTTGTCCCCGATAACCTGGAACACCAGAGGGCCTGACCTCAGTAACTGTACCTCCCCCTGGGTCAGTCAGATAGCACAGaagATAAAGAGTGGGGAGAATGCAGCTAACATCGCTGGTGAGTTAGTAAACCTGACGAGGGGGCGGGTCTACGCCGGTGATGTCAGCATGTCAGTCAAACTTCTAGAGCAGCTGTTGGACATCCTGGATTCTCAGCTTCAGGCCCTACGACCAGCCAACAAGGAGTCTGCTGCACGCAACTacaacaagTTGCAGAAGAGGGAACGCACCTGTAGAGCTTATGTCCAGGCGGTGGTTCAGGTAGTTGATAACCTGTTGGGCCCTGAAGCTCTAGTCTCCTGGGCTGATATGAGGACCACTGACCAATCACGCTCTGCCTCGCTGCTATTGGACGCCATGGAGAAAGGAGCCTTTCTATTGGCTAACAACATCTACGAGGGGCGATTCAGCGACAGAGCGCCCAATGTCGatctaGAGGTGTATGTATTGAACACAGAGGCAGATCTACAGGACCTGACGTTCCCTCACTCCTATGACAGTGACAGTGTTCTACAGCTCTCAACTGCTACTCTACAGCAGTACAGCAGCAatggtcaggtgaagatAGTTCTATCTCTGTATAAGAACCTTGGATCCTTCCTGACCACTAACAACTCCTCGTTGAGGTTGGAGGCGGGGTTTGTGATTGGCGGTGGCAGGAGGTTGGCAGTGAATTCTCACGTGATCTCGGCTTCTGTCAACAAAGGTTCCAACCGAGTATTCCTCTCTGAACCGGTCGTCTTCACTCTGCGACACCTACAGGTGGAGAACCACTTCAGCCCCAACTGTTCGTTCTGGAACTCCACGGGGTCGGGGGGGTCAGCATCGGGGTCGTCGGGGGGTCGTTGGTCGTCCCAGGGGTGTAAACGGATACacaccaacaacacacacaccacctgcgCCTGTAACCATCTGTCAACCTACGCTGTCCTGATGACCTACCaccaacctgcttctgtACATGGTATACAGGAGGTTCTGGTCTACGTAGTGTCCTGGGTAGGTATATCCGTAGCCCTGGTGTGCCTTGCAGCCTGCAGTACCTTACTGTGCTGCCAGGGGGCGCCACAGTCGGACCACAGCACCATACACAGGAATCTGTGGGGCAACCTCTTCATCACCGAACTCATCTTCCTCATTGGGGTGGATAAGACACAGTACAGCgTAGCGTGTCCAGTCTTTGCCGGTCTGCTCCATTTCTCCCTgctctctgtgttctgttggtTATGCCTGGAGGCAGTGGAACTCTACTTACTGCAGGGGGAGCTCTTTGAAGGACGGACCTCTAGGAGGAAGTACTTCTATCTCTGCGGCTACTTCCTGCCAGGGGTGGTCGTGGCCGTCTCCGCCGCCATCGACTACAGGGGCTACGGCACCCGGACCGTgtgttggCTGCAGATGGACAACTACTTCATCTGGAGTTTCCTGGGTCCTGTATCTGTCATTATAATgCTGAACCTGGTTGTCTTGGTGATGACTCTTCACAAGATGGTGCACAGCTCCTCCGCCCTCAAACCCGACTCCAGTCGTCACGACAACCTCAGaGCGTGGACTGTGGGTTCgctcaccctcctcttcctcctggtgGTGACCTGGTCTCTGGGGCTCgtcttcctctcatctccctctctcctcctctcctacctcttctcctcccttaACACGGCCCAGGCTCTGCTCATCACAATACTGTTCTGTACACTCACTAGGAAGGTAGGTGGGGTCTCAATACTGCCTCTACACTCACTAGGAAGGTAGGTGGGTTCTCAATACTGTTCTGTACACTCACTAGGAA
>TU1299305
CAGATAATTGTACGTGTTGGGTACTGAGATGGTGTAGTCAATCAAACAGCATGTCAAccactattattgtacacagaatgagtccatgcaacttattatgtgacttgttgagcacatttttactcctgaacttatttaggcttgacataacacAGGGGTTGAATActcattgactcaagacatttcagctttgaaTTTGTTGTTAATAATATGAAATCCCACAAACAAAATTCCACgttgacattatagggtattgtgtgtagatcgctgACACAACAGATCAAttgaatccatgttaaattcaggctgttacgtaacaacatgtggaataagtcaaggggcgtgaatactgtctgaaggcaACATATACAGTACAGGCCAACATattgtatgtgtactgtaggctacAATACGCTTGGTTTTTGTAACGAGCTCGTTACCTGCTCTTACATATGATAGGCATTGGATTGGTTAGGTTTAGGCTTTCTCCTGACTCCTAGATTCAATCTTTATAAATATTACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939965.1 False 4622 mRNA 0.53 22 5679164 5755819
TU1299305 True 523 lncRNA 0.37 1 5755818 5756340

Neighbor

gene id symbol gene type direction distance location
LOC118938515 LOC106592948 coding downstream 691 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 49318 5626611 ~ 5629846 (-)
LOC110517601 tmed1 coding downstream 83604 5585054 ~ 5595560 (-)
LOC110485445 LOC106564237 coding downstream 398301 5278946 ~ 5280863 (-)
LOC110516762 LOC106592646 coding downstream 412677 5245446 ~ 5266487 (-)
LOC110485432 LOC106593320 coding upstream 914 5756733 ~ 5783389 (-)
nxnl1 LOC106592756 coding upstream 38490 5794309 ~ 5799274 (-)
LOC110519495 LOC106566240 coding upstream 72581 5828400 ~ 6076863 (-)
LOC110516892 LOC106585402 coding upstream 257340 6013159 ~ 6033506 (-)
LOC110512397 LOC106592307 coding upstream 278539 6034358 ~ 6132682 (-)
G1139746 NA non-coding downstream 7878 5669870 ~ 5671286 (-)
G1139748 NA non-coding downstream 9803 5669084 ~ 5669361 (-)
G1139736 NA non-coding downstream 10319 5668002 ~ 5668845 (-)
G1139740 NA non-coding downstream 11430 5667319 ~ 5667734 (-)
G1139798 NA non-coding downstream 13823 5665016 ~ 5665341 (-)
G1139823 NA non-coding upstream 11418 5767237 ~ 5767977 (-)
G1139829 NA non-coding upstream 46836 5802655 ~ 5802866 (-)
G1139840 NA non-coding upstream 67221 5823040 ~ 5824694 (-)
G1139846 NA non-coding upstream 127446 5883265 ~ 6013720 (-)
G1139887 NA non-coding upstream 212894 5968713 ~ 6017737 (-)
G1138553 LOC106592646 other downstream 416651 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 434760 5216411 ~ 5244441 (-)
G1138568 NA other downstream 516210 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1059300 4619495 ~ 4620179 (-)
LOC110512654 LOC106592307 other upstream 289038 6044857 ~ 6058622 (-)
G1139916 NA other upstream 336540 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 850500 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 942563 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 1023429 6779248 ~ 6831814 (-)
G1139818 NA non-coding downstream 8651 5745674 ~ 5747167 (-)

Expression


Co-expression Network