LOC110516892 (LOC106585402)


Basic Information

Item Value
gene id LOC110516892
gene name LOC106585402
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6013159 ~ 6033506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939991.1
gagtgagagagagagaactgagcaGTGAATGAGTAAACCTAATTTCCATGTCAAGAATAAGAGCGGGAACTAGGGAGAGACAAGAGACAAAAATACACACTTACCAGAagatgtggagagggggaggagaggaagggaacagagaggggggagtgtgaaacagagagaaaggggtgCACTCtaacagaaagaggaagagagagcagagagaggagagcaaaaCTGAGGTTGCTGACACTGTGAGAGAATATTTATTTTCTCACCACTTATCATATGGAATATAAACCTTGTGGGATTTTCTTCAACCTGAATTCAACTGTAAAACAGATTTAATCTCAGACGGATTCTTCTTGTGGGACTAGTTTTATTAGGATCCTACTAGTTGTCTGGTGTGGATATAATACCAGTCTGTCTTTGAGATGGGGTCCAGAACTCTTCTACTTATTCTGGGTCTTAATTTCAGTCTGCTGGGGAACCTAGAGGCCAGAGATTGTCCCGGGGGCTTCATAGCCAAAGGGAGAACACTGTGTGTTGATATAGATGAGTGTAAAGAGTGGGACAGTAACCCACCCTGTGGAAGTAATGCCGCATGTTACAACACACAGGGGAGCTTCTACTGTCAGTGTCTACCTGGGTTCAGATCCACAACAACTTTCCAGTTTACTGCTCTCACTGGGGAGTGTAAGGacCTCGATGAGTGTCAGGGGAAACTGCAGGTTTGTACCAGCAACTCCATTTGCCTCAACACCATCGGGAGCTTCAACTGCCAATGCCAACCTGGTTTCAGATTCTCTGCTTATACTGGGCACTGTGAAGACCTCGATGAGTGCCAGGAGACACCTCAGGTTTGTGGCAGCAACGCCAGTTGCCTCAACACCTTCGGGAGCTACCACTGCCAGTGTCAACCTGGGTTCAGATTCTCTAATCACTCTTTGAAGGTGACTGTGACCTCCTCCTCAGACCAAATGACAGTACGCCCAGAACATTGTTCTGTGAACCAAAAAGactatctcagtttcaaggtcccAGATTTGAGAGAAGAAACCTTGTtagttatcagtcagtcagtcacttgcAGGAACCAACGTTGATGATGAATAATGAATCATGTAAATCATGCTTATATGAATTGTTTGGACAGCCGTATTTTagagaactaacgggactgccccggCAGAGCTCCTGACTGATGTGTACTATGTTGCATgaagtttgttggaacctctccagcttgctgataATAAAGAATGATTCATTTAAGTTTGA
>XM_036939992.1
acagagaggggggagtgtgaaacagagagaaaggggtgCACTCtaacagaaagaggaagagagagcagagagaggagagcaaaaCTGAGGTTGCTGACACTGTGAGAGAATATTTATTTTCTCACCACTTATCATATGGAATATAAACCTTGTGGGATTTTCTTCAACCTGAATTCAACTGTAAAACAGATTTAATCTCAGACGGATTCTTCTTGTGGGACTAGTTTTATTAGGATCCTACTAGTTGTCTGGTGTGGATATAATACCAGTCTGTCTTTGAGATGGGGTCCAGAACTCTTCTACTTATTCTGGGTCTTAATTTCAGTCTGCTGGGGAACCTAGAGGCCAGAGATTGTCCCGGGGGCTTCATAGCCAAAGGGAGAACACTGTGTGTTGATATAGATGAGTGTAAAGAGTGGGACAGTAACCCACCCTGTGGAAGTAATGCCGCATGTTACAACACACAGGGGAGCTTCTACTGTCAGTGTCTACCTGGGTTCAGATCCACAACAACTTTCCAGTTTACTGCTCTCACTGGGGAGTGTAAGGacCTCGATGAGTGTCAGGGGAAACTGCAGGTTTGTACCAGCAACTCCATTTGCCTCAACACCATCGGGAGCTTCAACTGCCAATGCCAACCTGGTTTCAGATTCTCTGCTTATACTGGGCACTGTGAAGACCTCGATGAGTGCCAGGAGACACCTCAGGTTTGTGGCAGCAACGCCAGTTGCCTCAACACCTTCGGGAGCTACCACTGCCAGTGTCAACCTGGGTTCAGATTCTCTAATCACTCTTTGAAGGCTTGATGGAAATTCCAATATCAAGTTTTCTGATGAGTTTACCAATGATTTGGTCACGTCtgctcctgctccccctctctgacGCTCGAGGTTGCCAGACGGctcatcattactcacacctctcaccatcattacgcgcccCAGCGCTTCatcggactcacctggactccatcatgtCATTGATTATCTACCCTATATCTGTCACCCCCTCCAGTTAATTTTCTGCGTCtgcattgatgttgttttgtttctcctgtccagacgctgttcctgttTTTCATGTCTGTTAATCCATTAAATATTCATTCCCTGTA
>XM_036939993.1
agtgagagagagagaactgagcaGTGAATGAGTAAACCTAATTTCCATGTCAAGAATAAGAGCGGGAACTAGGGAGAGACAAGAGACAAAAATACACACTTACCAGAagatgtggagagggggaggagaggaagggaacagagaggggggagtgtgaaacagagagaaaggggtgCACTCtaacagaaagaggaagagagagcagagagaggagagcaaaaCTGAGGTTGCTGACACTGTGAGAGAATATTTATTTTCTCACCACTTATCATATGGAATATAAACCTTGTGGGATTTTCTTCAACCTGAATTCAACTGTAAAACAGATTTAATCTCAGACGGATTCTTCTTGTGGGACTAGTTTTATTAGGATCCTACTAGTTGTCTGGTGTGGATATAATACCAGTCTGTCTTTGAGATGGGGTCCAGAACTCTTCTACTTATTCTGGGTCTTAATTTCAGTCTGCTGGGGAACCTAGAGGCCAGAGATTGTCCCGGGGGCTTCATAGCCAAAGGGAGAACACTGTGTGTTGATATAGATGAGTGTAAAGAGTGGGACAGTAACCCACCCTGTGGAAGTAATGCCGCATGTTACAACACACAGGGGAGCTTCTACTGTCAGTGTCTACCTGGGTTCAGATCCACAACAACTTTCCAGTTTACTGCTCTCACTGGGGAGTGTAAGGacCTCGATGAGTGTCAGGGGAAACTGCAGGTTTGTACCAGCAACTCCATTTGCCTCAACACCATCGGGAGCTTCAACTGCCAATGCCAACCTGGTTTCAGATTCTCTGCTTATACTGGGCACTGTGAAGACATCAATGAGTGTAGCGACAGCAACAGCTATGAATGCCCCGTTATCACCAACTGTACAAACACCATGATATTATTATTTGTAAGTTGTGTCAATGTGATTATGTGTATTTACATATTCATGTAGAAGAAACAGCAACAG

Function

NR:

description
adhesion G protein-coupled receptor E2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939991.1 False 1266 mRNA 0.45 5 6013159 6033506
XM_036939992.1 False 1114 mRNA 0.46 5 6016572 6033368
XM_036939993.1 True 955 mRNA 0.44 4 6024991 6033505

Neighbor

gene id symbol gene type direction distance location
nxnl1 LOC106592756 coding downstream 213885 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 229770 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 257340 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 334686 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 383313 5626611 ~ 5629846 (-)
LOC110512397 LOC106592307 coding upstream 852 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding upstream 12290 6044857 ~ 6058622 (-)
LOC110512959 LOC106592278 coding upstream 118691 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 140338 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 154552 6188058 ~ 6191695 (-)
G1139890 NA non-coding downstream 17093 5995241 ~ 5996066 (-)
G1139840 NA non-coding downstream 188465 5823040 ~ 5824694 (-)
G1139829 NA non-coding downstream 210293 5802655 ~ 5802866 (-)
G1139823 NA non-coding downstream 245182 5767237 ~ 5767977 (-)
G1139905 NA non-coding upstream 23360 6056866 ~ 6101418 (-)
G1139911 NA non-coding upstream 34857 6068363 ~ 6072303 (-)
G1139913 NA non-coding upstream 49978 6083484 ~ 6085105 (-)
G1138553 LOC106592646 other downstream 750646 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 768755 5216411 ~ 5244441 (-)
G1138568 NA other downstream 850205 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1393295 4619495 ~ 4620179 (-)
G1139916 NA other upstream 58853 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 572813 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 664876 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 745742 6779248 ~ 6831814 (-)

Expression


Co-expression Network