LOC110512654 (LOC106592307)


Basic Information

Item Value
gene id LOC110512654
gene name LOC106592307
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6044857 ~ 6058622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939988.1
gtgttgatgTGCAGGTGGGATTGTGTTCTTTTGTTGTGTAGGTGTGATTGTGTCCTGTCGTGTTATGTTCTGTTGTGTTGCACTGTGTCGTGTTGATCCAGGTGTGATGGTTGTGTGTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGAGTagtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGTAGTATCGATCCAGGTGTgatggtattgtgttgtgtttccTTCAGTACTGACCTGTGACCAGGTCAAAGCGGATCAGACTCCTGGACAGACTGTCCCAGGTTTAGCTGATCTCCTGTCTCTGATGAGGAAAAGCTGTCTGGCGTTAAGTAACTCTGGGGAAGCAGCCGGAGGGAGACTGACTGGAGAGGTGTTACTGgagAATGTCTTGACAGAGATAGACAGTCTCCTGTCTCAAGGTATCCTAAGCAACAACCGGGAGGTGAGTGGGTTGCTAGGCGCCGTGGAGGACACCTTGATGCTCATCGGGCCACAGCTCAGAGACACCCACACCACCATGGAAACAgaccacacagCTACTGAGCTTGCAGTGAGGAGGGGACAGACTCCGCCCATTGGGCCAATCAGCCTGGCCAATGACAACGTGCGACTGGACACCAGCTGGGAGACAGCCACTGGCAACGGGACGTACCCAGGTTTCACTCTGGCTGGGTTGGTGTGTTACAAGACAGTGGAGAGCTCTGTCAACAACTCCTTCCAGTACCTCACTGACACGGACACAAACAGATACACAGCAACCGCCACAGCATCAAAGCCTAGCTACCAGATCAGTTCCAAGGTGGTAACAGCTCTCGTCAGTAACCCAGCAACAGAACACCTCACCCAGCCTGTCATCCTCACCTTCAGACATCTTCAGGTGAGGGCGGAGTCAGCGAGGATGAACTATACCTGTGTGTTCTGGTCGGAGGGGCGTGTCCATGAAGAGGGAGGGGCGTGGTCAAGGAGTGGCTGTACCAAAGTCACGTCTAACGCTACACACACCGTGTGTTCCTGTTCCCACCTTAGCAGCTTTGCTGTTCTCATGGCCCTCTACCctgtacagaacacCTTTGAGCTGCGTCTGTTGACGTGGCTGGGTCTGTCGttgtctgtggtgtgtctgtTGCTGTGCATCCTGACCTTCTGGCTGTGTCGGTCCATCCAGGAGACACGCACCACCATCCACCTCCACCTCTGTGTCTGCCTCTTCATCGCTGACCTCGTCTTCCTCACCggaatctctcacacacagagcaaGggaGGATGTAGGGTTGTAGCAGGTCTCCTCCACCTGTTCTTCCTAGGATCCTTCAGTTGGATGTTGTTAGAGGGGGTTCAGCTCTACCTCATGGTGGTCCTGGTCTTCAACACTACCATAAGACCTCTGTACCTGCATGCTGTGGGATATGGACTGCCACTGGCTATAGTCATCATCTCTGCTATCACCTACCCAGATGGATACGGTACCACACAACACTGTTGGTTGTCTCTGGAGAGAGGATTCATCTGGAGTTTCTTCGGCCCAGTGtgcaccatcatcatcctcaacACTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTGAGAGAGGAGTATGGCAAGCTCCTGTCCTGTATCTGCACACCACTGAAGAAGAGATACACAGAGGTCAGCACTACTAACCCTTCTTCCAACCAatcccagGGGTCAAGGAGCGCAGAGAACACGGGGGAGTCGCAGATATGACGTCACCAAACCCCCATAATGCACCTCTTTACCCCTCCTCCCATGACAAAGGTTCCCACTAGATGGCCAAACTGTAAAGTCAAAATGGTCGATATCGTaaacatttatgaaaacaaaTATTTGCGTTTAGCGGTGTGGTTAAGATATATTGTAGAAATGGGAAGTGTTTCTGATTTAGGATCTTGGCCAGATAGTGACACACCAGAAACACTCATCCCGAGgatagtactgttcagaccaggttAGTAGAAAATGTGTCCAACTAGCCCGCCGGATAGTAAAAATGGAAGTCCACTAGCCAGGTTGGCCAGTACCCAAAATCCTTCAGTTCCATCCCTGATTAGACACTTCATATCAAACTTGATGTTAATTAACCACTGTCTAATCAAGCATTAGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGGGAACCATATGGTCTTTATGTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATATCCTCTTTATGTAatttttacagacacaaaagaGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATGTCCTCTTTATGTAatttttacagacacaaaagaTCGGTTCAATTTTACACAACTTCGTCGAATAGACAGATGAAGCCATACTTATAAACAGAAGCTTTCTTCCTTTACATGAATGTGATagatttatagtaatatttattacCAAGAGCACAAGATAGTGTGACTGTTCTACACAAATAAATCCAAAGGGATTTAGAAAAACATTAAGTGAAGATTTGTGTTAGTTGTGACCTATTGGACTGTTAtacttgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctccc
>XR_005035423.1
gtgttgatgTGCAGGTGGGATTGTGTTCTTTTGTTGTGTAGGTGTGATTGTGTCCTGTCGTGTTATGTTCTGTTGTGTTGCACTGTGTCGTGTTGATCCAGGTGTGATGGTTGTGTGTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGAGTagtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGTAGTATCGATCCAGGTGTgatggtattgtgttgtgtttccTTCAGTACTGACCTGTGACCAGGTCAAAGCGGATCAGACTCCTGGACAGACTGTCCCAGGTTTAGCTGATCTCCTGTCTCTGATGAGGAAAAGCTGTCTGGCGTTAAGTAACTCTGGGGAAGCAGCCGGAGGGAGACTGACTGGAGAGGTGTTACTGgagAATGTCTTGACAGAGATAGACAGTCTCCTGTCTCAAGGTATCCTAAGCAACAACCGGGAGGTGAGTGGGTTGCTAGGCGCCGTGGAGGACACCTTGATGCTCATCGGGCCACAGCTCAGAGACACCCACACCACCATGGAAACAgaccacacagCTACTGAGCTTGCAGTGAGGAGGGGACAGACTCCGCCCATTGGGCCAATCAGCCTGGCCAATGACAACGTGCGACTGGACACCAGCTGGGAGACAGCCACTGGCAACGGGACGTACCCAGGTTTCACTCTGGCTGGGTTGGTGTGTTACAAGACAGTGGAGAGCTCTGTCAACAACTCCTTCCAGTACCTCACTGACACGGACACAAACAGATACACAGCAACCGCCACAGCATCAAAGCCTAGCTACCAGATCAGTTCCAAGGTGGTAACAGCTCTCGTCAGTAACCCAGCAACAGAACACCTCACCCAGCCTGTCATCCTCACCTTCAGACATCTTCAGGTGAGGGCGGAGTCAGCGAGGATGAACTATACCTGTGTGTTCTGGTCGGAGGGGCGTGTCCATGAAGAGGGAGGGGCGTGGTCAAGGAGTGGCTGTACCAAAGTCACGTCTAACGCTACACACACCGTGTGTTCCTGTTCCCACCTTAGCAGCTTTGCTGTTCTCATGGCCCTCTACCctgtacagaacacCTTTGAGCTGCGTCTGTTGACGTGGCTGGGTCTGTCGttgtctgtggtgtgtctgtTGCTGTGCATCCTGACCTTCTGGCTGTGTCGGTCCATCCAGGAGACACGCACCACCATCCACCTCCACCTCTGTGTCTGCCTCTTCATCGCTGACCTCGTCTTCCTCACCggaatctctcacacacagagcaaGggaGGATGTAGGGTTGTAGCAGGTCTCCTCCACCTGTTCTTCCTAGGATCCTTCAGTTGGATGTTGTTAGAGGGGGTTCAGCTCTACCTCATGGTGGTCCTGGTCTTCAACACTACCATAAGACCTCTGTACCTGCATGCTGTGGGATATGGACTGCCACTGGCTATAGTCATCATCTCTGCTATCACCTACCCAGATGGATACGGTACCACACAACACTGTTGGTTGTCTCTGGAGAGAGGATTCATCTGGAGTTTCTTCGGCCCAGTGtgcaccatcatcatcctcaacACTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTGAGAGAGGAGTATGGCAAGCTCCTGTCCTGTATCTGCACACCACTGAAGAAGAGATACACAGAGGTCAGCACTACTAACCCTTCTTCCAACCAatcccagGGGTCAAGGAGCGCAGAGAACACGGGGGAGTCGCAGATATGACGTCACCAAACCCCCATAATGCACCTCTTTACCCCTCCTCCCATGACAAAGGTTCCCACTAGATGGCCAAACTGTAAAGTCAAAATGGTCGATATCGTaaacatttatgaaaacaaaTATTTGCGTTTAGCGGTGTGGTTAAGATATATTGTAGAAATGGGAAGTGTTTCTGATTTAGGATCTTGGCCAGATAGTGACACACCAGAAACACTCATCCCGAGgatagtactgttcagaccaggttAGTAGAAAATGTGTCCAACTAGCCCGCCGGATAGTAAAAATGGAAGTCCACTAGCCAGGTTGGCCAGTACCCAAAATCCTTCAGTTCCATCCCTGATTAGACACTTCATATCAAACTTGATGTTAATTAACCACTGTCTAATCAAGCATTAGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATGTCCTCTTTATGTAatttttacagacacaaaagaTCGGTTCAATTTTACACAACTTCGTCGAATAGACAGATGAAGCCATACTTATAAACAGAAGCTTTCTTCCTTTACATGAATGTGATagatttatagtaatatttattacCAAGAGCACAAGATAGTGTGACTGTTCTACACAAATAAATCCAAAGGGATTTAGAAAAACATTAAGTGAAGATTTGTGTTAGTTGTGACCTATTGGACTGTTAtacttgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcc
>TU1299433
caacACTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTGAGAGAGGAGTATGGCAAGCTCCTGTCCTGTATCTGCACACCACTGAAGAAGAGATACACAGAGGTCAGCACTACTAACCCTTCTTCCAACCAatcccagGGGTCAAGGAGCGCAGAGAACACGGGGGAGTCGCAGATATGACGTCACCAAACCCCCATAATGCACCTCTTTACCCCTCCTCCCATGACAAAGGTTCCCACTAGATGGCCAAACTGTAAAGTCAAAATGGTCGATATCGTaaacatttatgaaaacaaaTATTTGCGTTTAGCGGTGTGGTTAAGATATATTGTAGAAATGGGAAGTGTTTCTGATTTAGGATCTTGGCCAGATAGTGACACACCAGAAACACTCATCCCGAGgatagtactgttcagaccaggttAGTAGAAAATGTGTCCAACTAGCCCGCCGGATAGTAAAAATGGAAGTCCACTAGCCAGGTTGGCCAGTACCCAAAATCCTTCAGTTCCATCCCTGATTAGACACTTCATATCAAACTTGATGTTAATTAACCACTGTCTAATCAAGCATTAGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGGGAACCATATGGTCTTTATGTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATATCCTCTTTATGTAatttttacagacacaaaagaGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATGTCCTCTTTATGTAatttttacagacacaaaagaTCGGTTCAATTTTACACAACTTCGTCGAATAGACAGATGAAGCCATACTTATAAACAGAAGCTTTCTTCCTTTACATGAATGTGATagatttatagtaatatttattacCAAGAGCACAAGATAGTGTGACTGTTCTACACAAATAAATCCAAAGGGATTTAGAAAAACATTAAGTGAAGATTTGTGTTAGTTGTGACCTATTGGACTGTTAtacttgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcccccgctttcccccagctgttccttgtcccctcttgactacctcgtcaccccttctcccacctgttccccttttccctctgattagtcccctatatctctctctgtttttgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctaccacagtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcactcaccgtaacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgccgagatccagggagcgatgctaggcagacacgagcaggaattgtctgctgctcgacatgccgttgagaccctggccacccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccaccggctacttccagggctttcgaatctccggagcccagaatcaataacccgccgtgttactctggggagcccactgaatgccgctcgttcctcacccagtgtgatattgtgttttctctccagcccaacacttactccaggagcactgctcgtgtcgcctacgtcatatctctcctcattggacgggctcgtgagtggggcacggcaatctgggaggcaagggctgagtgtactaaccagtatcaggactttaaggaggagatgatacgggtttttgatcgatctgtttttggggaggaggcttccagggccctgtcttccctatgtcaaggtaatcgatccataacagactactctattgagtttcgcactcttgctgcctccagtggctggaacgagccggctttgctcgctcgttttctggagggtctccgcgcagaggtaaaggatgagattctctcc
>TU1299438
caacACTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCT

Function

NR:

description
CD97 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939988.1 False 3523 mRNA 0.46 13 6045796 6058622
XR_005035423.1 False 3312 mRNA 0.47 14 6045797 6058622
TU1299433 False 2400 TUCP 0.46 4 6044857 6048940
TU1299438 True 249 lncRNA 0.50 2 6047264 6048940

Neighbor

gene id symbol gene type direction distance location
LOC110516892 LOC106585402 coding downstream 12290 6013159 ~ 6033506 (-)
nxnl1 LOC106592756 coding downstream 246522 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 262407 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 289977 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 367323 5671437 ~ 5678473 (-)
LOC110512959 LOC106592278 coding upstream 93575 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 115222 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 129436 6188058 ~ 6191695 (-)
LOC118938166 LOC106592843 coding upstream 145349 6203971 ~ 6244613 (-)
LOC110519908 LOC106592827 coding upstream 190288 6248910 ~ 6306407 (-)
G1139888 NA non-coding downstream 26630 5969817 ~ 6019166 (-)
G1139887 NA non-coding downstream 28059 5968713 ~ 6017737 (-)
G1139846 NA non-coding downstream 32076 5883265 ~ 6013720 (-)
G1139890 NA non-coding downstream 49730 5995241 ~ 5996066 (-)
G1139840 NA non-coding downstream 221102 5823040 ~ 5824694 (-)
G1139911 NA non-coding upstream 9741 6068363 ~ 6072303 (-)
LOC110512397 LOC106592307 non-coding upstream 21276 6034358 ~ 6132682 (-)
G1139913 NA non-coding upstream 24862 6083484 ~ 6085105 (-)
G1139898 NA non-coding upstream 70408 6129030 ~ 6131208 (-)
G1139747 NA non-coding upstream 92965 6151587 ~ 6234823 (-)
G1138553 LOC106592646 other downstream 783283 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 801392 5216411 ~ 5244441 (-)
G1138568 NA other downstream 882842 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1425932 4619495 ~ 4620179 (-)
G1139916 NA other upstream 33737 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 547697 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 639760 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 720626 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 786788 6842471 ~ 6853303 (-)
G1139905 NA non-coding upstream 7926 6056866 ~ 6101418 (-)

Expression


Co-expression Network