LOC110512959 (LOC106592278)


Basic Information

Item Value
gene id LOC110512959
gene name LOC106592278
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6152197 ~ 6167475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939989.1
ggttgtaggacaggagagagagagcggcagagagagagatagagaggttgaGAGGTTGTAGgacaggagagaggcagagaggttgtaggacaggagagagggatatCTTTGCTCTATGCAACATGGATTCCTCCACAACAGCACTGCTCCTCTGCTCTCTACTCTGGACAGTATGTGCCCAGGCCCCAGTAGTGTCAGTTGAGCCCAGGTCAGCAGGGGTCCGGCAGGGGGAGTCGGTCAGTTTTCGCTGCCGGGTGGTTAGTGGGTCACAGCCCGTCCGTCTGGAGTGGAAGAGAACCAACAACCATCCACTGGCAGATAACGTGAAGATTGGCCCGGATGGTTCCGTGCTCACCATCGCTAACACCAGGAACGGTAACCAGGGACAGTACCGTTGCGTGGCTACTAACTCTGCGGGCCGAAGCACCATGATGGCCTCATTGACCATCAAACATTCCCCTAAGGTGCGGGTGACCCCTGCAGGGCCCCTGCGAGTCCGGCTTGGTGAACCTGTAGCTCTGGAATGCCACGCCACAGGTAGGCCACGCCCCTCCGTTACCTGGCAACGCCACGGAACACAGCTGGTAACCACAAAGACCGAGGACACCAGTACACTGAAGGTGGCAGCAGTGAGCTCTGAGGACGCTGGAGTGTACGTGTGTCAGGCCCAGAACACTGAGGGGGTCGCCGAGGTCAAGTTGGAGGTCATCGTTGAGGGCGGCCAGGGCGCTGCCAACGCACCCAAGGCGACGGTATCCATGGCAGAGGTGACAGCTGTGGAGGGTCACATGGTCACCATGCAGTGTCAGGCCACAGGTTCTCCCCTTCCTGTTGTCTCCTGGTCTAAACTGCGAGCCCCGTTACCATGGAAGCACACTGTGGAGGGTGGTGTTCTGACTCTGACCAGCGTGGGGCGCCAGGATTCAGGACAGTACATCTGTAATGCCACCAATACACACGGATACAGCCAGGCATACACACAGCTAGAGGTGgactccCCTCCCTACACCACCAGTCTACCAGACCAGGTGAGACTCCGCCCCGGTGACACCCTCCGTCTCCAGTGCCTCGCCCACGGCTCTCACCCAATCACATTCCGTTGGACGCGGGTGGGCCGGGCCGGCATGCCCGCAGGGGCGGAGACCAGTAAGAATGGCCAGCTGCTGATTGGCCAGGTGAAGTTGAATGACAGCGGGACCTACAAATGCGTGGCGACCAACCACGTTGGTTTCAGCGAGGCTCTGGCGAAGGTCACAGTGAAAGCCTAAGCCAACTCATCTCCCCTGCGGCTCTCTTCATACGTCTAATGTTGATGTCACAAACCCCACAACCCCCCCAAGATATGCATACATAGTGGGGAAAAAAATGTTTATGAAATAAATGTTGATAAAATCAATAATGGTAAA

Function

NR:

description
PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939989.1 True 1406 mRNA 0.57 8 6152197 6167475

Neighbor

gene id symbol gene type direction distance location
LOC110512397 LOC106592307 coding downstream 19515 6034358 ~ 6132682 (-)
LOC110519495 LOC106566240 coding downstream 75334 5828400 ~ 6076863 (-)
LOC110512654 LOC106592307 coding downstream 93575 6044857 ~ 6058622 (-)
LOC110516892 LOC106585402 coding downstream 118691 6013159 ~ 6033506 (-)
nxnl1 LOC106592756 coding downstream 352923 5794309 ~ 5799274 (-)
LOC118938167 LOC106564205 coding upstream 6369 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 20583 6188058 ~ 6191695 (-)
LOC118938166 LOC106592843 coding upstream 36496 6203971 ~ 6244613 (-)
LOC110519908 LOC106592827 coding upstream 81435 6248910 ~ 6306407 (-)
LOC110485390 LOC106594684 coding upstream 261647 6429122 ~ 6450055 (-)
G1139898 NA non-coding downstream 20989 6129030 ~ 6131208 (-)
G1139905 NA non-coding downstream 50779 6056866 ~ 6101418 (-)
G1139913 NA non-coding downstream 67092 6083484 ~ 6085105 (-)
G1139911 NA non-coding downstream 79894 6068363 ~ 6072303 (-)
G1139981 NA non-coding upstream 121096 6288571 ~ 6302416 (-)
G1139994 NA non-coding upstream 149196 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 156052 6323527 ~ 6323756 (-)
G1140021 NA non-coding upstream 208340 6375815 ~ 6376564 (-)
G1140024 NA non-coding upstream 216169 6383644 ~ 6383868 (-)
G1139916 NA other downstream 58681 6092359 ~ 6093516 (-)
LOC118938515 LOC106592948 other downstream 479950 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 889684 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 907793 5216411 ~ 5244441 (-)
LOC110485426 LOC106594040 other upstream 438844 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 530907 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 611773 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 677935 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 752254 6919729 ~ 6952206 (-)

Expression


Co-expression Network