LOC118938167 (LOC106564205)


Basic Information

Item Value
gene id LOC118938167
gene name LOC106564205
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6173844 ~ 6177005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035424.1
tgtttactTACCGGTAACATATATTTATTGGAGGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTttaggatggagggagaaggagaggtgctCTATAGGACAGTCCCCTGGGACAGGAGGCTTCTATCCCAGAGAAGCAAGAGACCTGCAGGACCCCTGTTCATGTTTAGATGCCTTAAGGGGTCTGTCAGTCAACTACACCTCCCACACTGTCAGATGCAATCTGGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGACTGAGTTTATCCCTCCTCTtgacacaacagacacacatgtCATAATATACATCACTGGATTCTGTCTCGGTGCGGGAGGTGATTGAAAGGGATGGAATTAGAGAAATTCAAACAACTTCTCAGTGTAAACTAACCCCGAAGCAAGAATACACCCTCTCCACTTATTCTGCAGATGGACATCGAATACAACCAAACGCAAATCTGGGATATTTTTGAATAACAATTTTTTATATTCCTATGTAACTTTTCATTTCATTCTCACTTTTAATTTCACTGACTACAAAGGT

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 1b allele 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035424.1 True 564 mRNA 0.43 3 6173844 6177005

Neighbor

gene id symbol gene type direction distance location
LOC110512959 LOC106592278 coding downstream 6369 6152197 ~ 6167475 (-)
LOC110512397 LOC106592307 coding downstream 41162 6034358 ~ 6132682 (-)
LOC110519495 LOC106566240 coding downstream 96981 5828400 ~ 6076863 (-)
LOC110512654 LOC106592307 coding downstream 115222 6044857 ~ 6058622 (-)
LOC110516892 LOC106585402 coding downstream 140338 6013159 ~ 6033506 (-)
LOC118938516 NA coding upstream 11053 6188058 ~ 6191695 (-)
LOC118938166 LOC106592843 coding upstream 26966 6203971 ~ 6244613 (-)
LOC110519908 LOC106592827 coding upstream 71905 6248910 ~ 6306407 (-)
LOC110485390 LOC106594684 coding upstream 252117 6429122 ~ 6450055 (-)
LOC110487211 LOC106564193 coding upstream 293468 6470473 ~ 6508696 (-)
G1139898 NA non-coding downstream 42636 6129030 ~ 6131208 (-)
G1139905 NA non-coding downstream 72426 6056866 ~ 6101418 (-)
G1139981 NA non-coding upstream 111566 6288571 ~ 6302416 (-)
G1139994 NA non-coding upstream 139666 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 146522 6323527 ~ 6323756 (-)
G1140021 NA non-coding upstream 198810 6375815 ~ 6376564 (-)
G1140024 NA non-coding upstream 206639 6383644 ~ 6383868 (-)
G1139916 NA other downstream 80328 6092359 ~ 6093516 (-)
LOC118938515 LOC106592948 other downstream 501597 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 911331 5201055 ~ 5262513 (-)
LOC110485426 LOC106594040 other upstream 429314 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 521377 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 602243 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 668405 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 742724 6919729 ~ 6952206 (-)

Expression


Co-expression Network