LOC118938516


Basic Information

Item Value
gene id LOC118938516
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6188058 ~ 6191695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942561.1
ATGTACTGGTTGCCAACCGTCGTTTTAACCTCATCGAAGAAGAAGGATGGGCTGGACGGTTGGAAACAAGCTACAAGTAAAGCCAATGATAgtaatacacatacagtgcattctgaaagtattcccGACCCCTTTgaatttttccatattttgttacgttacagccttattctaacagaAACACACATCATAATTAACGTCACTGGATTCTCTGCTTATGGCATCGTCCATGAAGAAGATGCTCCCATCTCCCCTATCCAGGGGCTTGTGTTGATATTCTACCAACCGTTTGTCCCTGAACAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGTAATGTTGTGAGAAAAGAGGTGCGGGAGGTGATTGAAAGGGATGGAATTAGAGAAATTCAAACAACTTCTCAGTGTAAACTAACCCCGAAGCAAGAATACACCCTCTCCACTTATTCTGCAGATGGACATCGAATAGAACCAAAAGAAGCAGTGTTTGTGAAATGTGATTCCTATGAAAACAACTACTTTCAGTTGTTCTTACAAACTATAGTTAAAGAAGTTGATCTGCTTCTGAAAGAAAAGGAAGGTGATGAACTTGTATGGAACAGACTTGTCTGGCTGCCAGCCTCACCAACGGATGTCCCCTCTACAGTTTCAGCTGTTTCCCCTGCAGCCCCTACTGCCAACCCCTCTACCCCCCCTGGCAGAGCCTTCATCAGAAGAAACAGGATGTCTCTAGAGACTCGCCTGGGGCTCTTACAGCCCATATTCCTGCGTCTCCAGGATCGTGGGGTTCTGATTGATGAGGGAGGAGGTGGTCAGTAAATCCACCAAGACCCTACAGAACCAAGCCCTGCTGGACATGGTGGTAAAGAAGGGGGCTCGCGCCCAGGAACACTTCTACCAGGTCCTGAAGGAAGTAGATCCCTGCCTGGTCGAATACCTGGAAGAGCAGACAGTCTGAGAGGTAACCATGGATACAACCTCAGAAGATATCAAAACATTTAGAGACAGATCAGCACTTTGAGGAGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACAAGATCAGGGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACAGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACAAGATCATGACTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAGACAACAAGATGATTTAATTTCTATCTGGAACATGGTGAATGTTGAATCATCTTGGACAGGTCTCGGACAACAACATGTGAGACTTAACATCTGACTTGTACTGGACAGCTGTACTGGCTGAACACCAGAtctagatacagtggggagaacaagtatttgatacactgccgattttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttca

Function

NR:

description
caspase recruitment domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942561.1 True 1768 mRNA 0.45 6 6188058 6191695

Neighbor

gene id symbol gene type direction distance location
LOC118938167 LOC106564205 coding downstream 11053 6173844 ~ 6177005 (-)
LOC110512959 LOC106592278 coding downstream 20583 6152197 ~ 6167475 (-)
LOC110512397 LOC106592307 coding downstream 55376 6034358 ~ 6132682 (-)
LOC110519495 LOC106566240 coding downstream 111195 5828400 ~ 6076863 (-)
LOC118938166 LOC106592843 coding upstream 12276 6203971 ~ 6244613 (-)
LOC110519908 LOC106592827 coding upstream 57215 6248910 ~ 6306407 (-)
LOC110485390 LOC106594684 coding upstream 237427 6429122 ~ 6450055 (-)
LOC110487211 LOC106564193 coding upstream 278778 6470473 ~ 6508696 (-)
LOC110485423 LOC106592905 coding upstream 353556 6545251 ~ 6584693 (-)
G1139898 NA non-coding downstream 56850 6129030 ~ 6131208 (-)
G1139905 NA non-coding downstream 86640 6056866 ~ 6101418 (-)
G1139981 NA non-coding upstream 96876 6288571 ~ 6302416 (-)
G1139994 NA non-coding upstream 124976 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 131832 6323527 ~ 6323756 (-)
G1140021 NA non-coding upstream 184120 6375815 ~ 6376564 (-)
G1140024 NA non-coding upstream 191949 6383644 ~ 6383868 (-)
G1139916 NA other downstream 94542 6092359 ~ 6093516 (-)
LOC110512654 LOC106592307 other downstream 139118 6044857 ~ 6058622 (-)
LOC118938515 LOC106592948 other downstream 515811 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 925545 5201055 ~ 5262513 (-)
LOC110485426 LOC106594040 other upstream 414624 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 506687 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 587553 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 653715 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 728034 6919729 ~ 6952206 (-)

Expression


Co-expression Network