LOC118938166 (LOC106592843)


Basic Information

Item Value
gene id LOC118938166
gene name LOC106592843
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6203971 ~ 6244613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939958.1
GGCTGAACCGGATATGTAAATGAATTAAAAAACGAAAGTAATTTTGGAGAACGGGATGATCGAACTGTTTCTGTTGAGCGAGAGATACAAGGTCTCCTAGATCAAGACTCTGTAGAGACAAAGAGATGGGGAGCAACTGCACCAAAAGGaccagagaagaggagagcactCACTCTGTCTCAAGGcggggagaagaggggagcacTCACCCTGTCTTACGTCCGATATATAGCTCTGAGAGCTATTACAGCGCTTATGGATCTGCACAATTTGAAGACGACCTGATGGGGAGAGAACCAATATTCGGATCCGCCCACCGTTTTGAGGATGTTGAGACAGAGAAGATATGTGAGGAAACCGTGGATGACATCACACAGATAGTTAAAGGGAAACTGAAAGCCAGTCTGAAGAAGAAGTTTAGATGTGTATTTGAAGGCACTGCTGAGGAACAAAATGGACTTGATAGCatttacacacagctctacatCACACAAGAAGAGGTTAATAAAGAACATGAGGTTCGACGGATTGAATATCCATCCAAGAGAAACATATCAGACACTCCAATAAACTGCAATGACATCTTCAAACCCTTacctggagaagagaagagacctaTCAGAACTGTAATGACAAAGGGAATCACTGGCATCGGAAAAACGATCTCTGTACATAAGTTCATCCTCGACTGGGTAGAAGGAAACGCCAATCAGGATGTTGATTTCATCTTTGTGCTTCCTTTCCGAGAACTGAATTTGATTAAAGATGAGCAGTACAGTCTTCATGGACTTCTGAATGACTTCCACCCTGAACTAACAGAGATAGTAGAAGCAAAGATTTATGCTACCTGcaaagttctgttcatctttgatggtctggatgaaAGCCAACTGCCATTAGGTTTTGAAAAACACAAGAGGGTGACTGATGCTACACAGACATCATCGGTGGATGTGCTGCTGACAAACCTCATTGAGGGGAATCTACTCCCTGAAGCTCTCCTCTGGATAACCTCCCGACCAGCAGCAGCCAATCAGGTCCCCTGTAAGTACATTGACAAGGTGACAGAAGTACGAGGGTTCAACGACAAACAGAAAGAAGAATACTTTAAGAAGAATGTTGAGGATGAGAACCGGGCCAGGAGAATCATCTCCCACATTAATacatcaaggagcctccacatcatgtgccacataCCAGTCTTCTGTTGGATTACTGCCAGGGTTCTTGAGCAAATGTTGAGTGAAGATGAGAGTGGAGAGATCACAactctgactgagatgtacaATCACTTCCTGCTCATTCAGACAAACCTGAAAAGCAATAAGTATGATGGGGAAAGGGAGACGGATCTGGACATCATCATAGAAAGAAACAAAGAAATAATTCTCAAACTGGCACAACTTGCATTTGAACAGCTGGTGAAGGGCAATCTCATATTCTCTAAGAAAGACCTGGAGGAGTGTGGCATTGATGTCAGTGAAGCCTCAGTGTACTCTGGGTTTTGCACAGAAATCCTGAAAGAAGAGTATGGGCTGTATCGGAAGAAAGTGTACTGCTTTGTCCACCTGAGCTTCCAGGAGTTCCTTGCTGCTCTGTACGTGTTCCACTGCTGTGCGAGCAAGAACATCAAGGCCCTGGAGTCGTTCGTTGGGGATGTGTCATCAGAGCTGTCCTTGCATGAGCTGCTGAAGATGATGGTAGATAAAGCCTTGGAGAGTGAGAATGGACACCTGGACCTGTTCCTCCGTTTCCTTGTTGGCATCTCAACAGAATCCAACCAGAAACTGTTACAAGACCTACTGCCACAAACAGAGATCAGCTCAGAGACTGTTAAGGAAATTAAGAAATACCTCAGGAAGCCAAATGTAGATCAAGTCTCACCTGATAGGTACATCAATCTACTCATCTGCTTGACTGAGATGAAAGATGATTCAGTACATGAGGACATTGACAAGTTCCTAAAGTCTGGACTACCTGCAGAAATAGAAATGTCCCCCGGTGACTGCTCAGCTCTGGCCTATGCGCTGCTGATATCAAAGGGCGTGCTGGATGAACTTGACCTACAGAGATACAACACATCTAAGGAGGGGCGTTTGAGACTAATCCCAGCAGTGAGGAGTTGCAGAGAGGCAATACTTGCTGGCTGTGAACTCACTGAGTGGTTTTATAAAGCATTGGCCTCAGTTCTCAGCTCAAATGACTCTTACCTGAGAAAGCTGGACCTGAGTAAtaatgacctgaaggattcaggagtgaaggtgctctctgctggactggggaatccaCACTGTGAACTAGAGACACTGAGGATGTCATTCTGtagagtcacagaggaaggctgtgcttctctggcttCAGCTCTGGAGTcaaacccctcccatctgagAGAACTGGACCTGAGCTtcaatcacccaggagactctggagtgaagctgctctctgctagactggaggatccacactgtagactggagaaactcaatGTGGACCATAATGAAGAGTTCTGGGTTAAACCACAGCTGATGAAGAAATATGCCTGtgatctcacactggacccaaacacagcacacagaaacctctctctgtctgaggggaACAGAAGGGTGGAGAGGGTTAAAGAGGAGCAGCCGTATCCTGATCATCCAGAGAGATTTGATCACTATACCCAGGTgttgtgtagagagggtctgactgggcgctgttactgggaggtagagtgCAGTGGGCTGGCTGACATTGGAGTGACATGTAAAGGCATCAGTAGAAAAGGAGATGGTTCTGCCAGTGAATTTGGATACAATAAGAAGTCCTGGAGTCTGATCTGCCGTGGGAATCATTACGGTGCCCTCCACAATAGTCAATATACTACAATACATGCTCCACACCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcTTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctccacgcctcagagtaggagtgtttCTGGACTGGCTGACCGGCACTCTGTCGTTCTACAAGGTCTACTCTGGCTTGATGACCCACCTGCACACATTCCAGACCAtattcactgagcccctctatcccaCTTTTGGGCTTCAGCATCCTCACACCTCTGTGTCCCCCGGGTTTGCCAGCAATCCTGTATCATCTGAGGCCACCCGCTGTCCAGATGAGATCCTGATAATGACAGAAATATGCATAAGGGAAGAAGAAGGAAAagaggaagatgatgatgaagaagaatACAACAGAGAAGTGGATTTTCTTCTCCTGGAATACAGTGATCCAACCTTGTCAAAACAGAAAGGATCATCCATTCCCTTGCCATGCTCTCACAGTTGGCCTTTTTCTAGTGAGGGGACATTGGAAGAGGAGAGCGAGGACGGTGTCAGAGGTCATCTTTCTAACAGCTTACCTGATGCAATGGAGAATTTAACCATCACAGAGATTAGAAGAGTCAACCAGGGCCTGTTTACTACTGACCCTCCCATGATGGTTTCCAATACCTTTGAACCAGAAATCTATAATCATGAGGGCAAGGGAGCATACCGGTTCCAGTGCCCCAGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTtcaggatggagggagaaggagaggtgctCTATAGGACAGTCCACTGGGACAGGAAGCTTCTATCCCAGAGTGGAAAGAGGCCTGCAGGACCCCTGTTCAACATCGACTGTCCTCAGAAGTCTGTCTGTCAACTACACCTCCCACACTGTCAAATTCATTCTTGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACATCATTGAGTTTCTCCCCCCCCATgagacaacagacacacatgTCATAATAAACATCACTGGATTATCTGCCTATGGTGATGTCACAGATGATGATGCTCCCATCTCCCCCATACTTGCACATGTGTTGTTATTCTACCAACCACTTGGCAAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGTAATGTTGTGAGAAAAGAGGTGCGGGAGTTGATtgaaagggatggaataagagaAATTCTTACAACGTCTCTGTGTACACTTACCCCAAAGCAAGAATACACCCTCTCCACTAACCCTGCAGATGCACATCCAATACAACCAAACCCAGCAAAATTTGTGGATTCCTATGAAAACTACGTCCCCACATTTCAGTTGTTTATTAAACCTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAAAATAAAGCTGAAAAACTTGTATGGAACGGACTTGTCTGGCTTCCAGTTACACCACCAGGTGGCGCTACAGCAGGGACAAAAAATGTTCATTTTCTGCTGCTTGACATTCTGGAAGAGCTGGGCCGAGGCGACCTGAAGAAATTTCAGTGGTACATTAATAAGGGTGTGGAGGAATTTCCTTCCATCTCAGAGGGCCAGCTGGAGGATGCTGACAGACTGTTCACAGTGGATAGGATGGTACAGAGCTACTGTGATGAGGGAGCTGTGAAGATCACACTGGAGATCCTGAGGAAGATGGGTCGGAACAACCTGGCTGAGGAGTTAAAGGAGAAGTTGACAAAACAGGTCTGAATGCCATAAACTATctacaatattaaagctga
>XM_036939959.1
GGCTGAACCGGATATGTAAATGAATTAAAAAACGAAAGTAATTTTGGAGAACGGGATGATCGAACTGTTTCTGTTGAGCGAGAGATACAAGGTCTCCTAGATCAAGACTCTGTAGAGACAAAGAGATGGGGAGCAACTGCACCAAAAGGaccagagaagaggagagcactCACTCTGTCTCAAGGcggggagaagaggggagcacTCACCCTGTCTTACGTCCGATATATAGCTCTGAGAGCTATTACAGCGCTTATGGATCTGCACAATTTGAAGACGACCTGATGGGGAGAGAACCAATATTCGGATCCGCCCACCGTTTTGAGGATGTTGAGACAGAGAAGATATGTGAGGAAACCGTGGATGACATCACACAGATAGTTAAAGGGAAACTGAAAGCCAGTCTGAAGAAGAAGTTTAGATGTGTATTTGAAGGCACTGCTGAGGAACAAAATGGACTTGATAGCatttacacacagctctacatCACACAAGAAGAGGTTAATAAAGAACATGAGGTTCGACGGATTGAATATCCATCCAAGAGAAACATATCAGACACTCCAATAAACTGCAATGACATCTTCAAACCCTTacctggagaagagaagagacctaTCAGAACTGTAATGACAAAGGGAATCACTGGCATCGGAAAAACGATCTCTGTACATAAGTTCATCCTCGACTGGGTAGAAGGAAACGCCAATCAGGATGTTGATTTCATCTTTGTGCTTCCTTTCCGAGAACTGAATTTGATTAAAGATGAGCAGTACAGTCTTCATGGACTTCTGAATGACTTCCACCCTGAACTAACAGAGATAGTAGAAGCAAAGATTTATGCTACCTGcaaagttctgttcatctttgatggtctggatgaaAGCCAACTGCCATTAGGTTTTGAAAAACACAAGAGGGTGACTGATGCTACACAGACATCATCGGTGGATGTGCTGCTGACAAACCTCATTGAGGGGAATCTACTCCCTGAAGCTCTCCTCTGGATAACCTCCCGACCAGCAGCAGCCAATCAGGTCCCCTGTAAGTACATTGACAAGGTGACAGAAGTACGAGGGTTCAACGACAAACAGAAAGAAGAATACTTTAAGAAGAATGTTGAGGATGAGAACCGGGCCAGGAGAATCATCTCCCACATTAATacatcaaggagcctccacatcatgtgccacataCCAGTCTTCTGTTGGATTACTGCCAGGGTTCTTGAGCAAATGTTGAGTGAAGATGAGAGTGGAGAGATCACAactctgactgagatgtacaATCACTTCCTGCTCATTCAGACAAACCTGAAAAGCAATAAGTATGATGGGGAAAGGGAGACGGATCTGGACATCATCATAGAAAGAAACAAAGAAATAATTCTCAAACTGGCACAACTTGCATTTGAACAGCTGGTGAAGGGCAATCTCATATTCTCTAAGAAAGACCTGGAGGAGTGTGGCATTGATGTCAGTGAAGCCTCAGTGTACTCTGGGTTTTGCACAGAAATCCTGAAAGAAGAGTATGGGCTGTATCGGAAGAAAGTGTACTGCTTTGTCCACCTGAGCTTCCAGGAGTTCCTTGCTGCTCTGTACGTGTTCCACTGCTGTGCGAGCAAGAACATCAAGGCCCTGGAGTCGTTCGTTGGGGATGTGTCATCAGAGCTGTCCTTGCATGAGCTGCTGAAGATGATGGTAGATAAAGCCTTGGAGAGTGAGAATGGACACCTGGACCTGTTCCTCCGTTTCCTTGTTGGCATCTCAACAGAATCCAACCAGAAACTGTTACAAGACCTACTGCCACAAACAGAGATCAGCTCAGAGACTGTTAAGGAAATTAAGAAATACCTCAGGAAGCCAAATGTAGATCAAGTCTCACCTGATAGGTACATCAATCTACTCATCTGCTTGACTGAGATGAAAGATGATTCAGTACATGAGGACATTGACAAGTTCCTAAAGTCTGGACTACCTGCAGAAATAGAAATGTCCCCCGGTGACTGCTCAGCTCTGGCCTATGCGCTGCTGATATCAAAGGGCGTGCTGGATGAACTTGACCTACAGAGATACAACACATCTAAGGAGGGGCGTTTGAGACTAATCCCAGCAGTGAGGAGTTGCAGAGAGGCAATACTTGCTGGCTGTGAACTCACTGAGTGGTTTTATAAAGCATTGGCCTCAGTTCTCAGCTCAAATGACTCTTACCTGAGAAAGCTGGACCTGAGTAAtaatgacctgaaggattcaggagtgaaggtgctctctgctggactggggaatccaCACTGTGAACTAGAGACACTGAGGATGTCATTCTGtagagtcacagaggaaggctgtgcttctctggcttCAGCTCTGGAGTcaaacccctcccatctgagAGAACTGGACCTGAGCTtcaatcacccaggagactctggagtgaagctgctctctgctagactggaggatccacactgtagactggagaaactcaatGTGGACCATAATGAAGAGTTCTGGGTTAAACCACAGCTGATGAAGAAATATGCCTGtgatctcacactggacccaaacacagcacacagaaacctctctctgtctgaggggaACAGAAGGGTGGAGAGGGTTAAAGAGGAGCAGCCGTATCCTGATCATCCAGAGAGATTTGATCACTATACCCAGGTgttgtgtagagagggtctgactgggcgctgttactgggaggtagagtgCAGTGGGCTGGCTGACATTGGAGTGACATGTAAAGGCATCAGTAGAAAAGGAGATGGTTCTGCCAGTGAATTTGGATACAATAAGAAGTCCTGGAGTCTGATCTGCCGTGGGAATCATTACGGTGCCCTCCACAATAGTCAATATACTACAATACATGCTCCACACCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcTTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctccacgcctcagagtaggagtgtttCTGGACTGGCTGACCGGCACTCTGTCGTTCTACAAGGTCTACTCTGGCTTGATGACCCACCTGCACACATTCCAGACCAtattcactgagcccctctatcccaCTTTTGGGCTTCAGCATCCTCACACCTCTGTGTCCCCCGGGTTTGCCAGCAATCCTGTATCATCTGAGGCCACCCGCTGTCCAGATGAGATCCTGATAATGACAGAAATATGCATAAGGGAAGAAGAAGGAAAagaggaagatgatgatgaagaagaatACAACAGAGAAGTGGATTTTCTTCTCCTGGAATACAGTGATCCAACCTTGTCAAAACAGAAAGGATCATCCATTCCCTTGCCATGCTCTCACAGTTGGCCTTTTTCTAGTGAGGGGACATTGGAAGAGGAGAGCGAGGACGGTGTCAGAGGTCATCTTTCTAACAGCTTACCTGATGCAATGGAGAATTTAACCATCACAGAGATTAGAAGAGTCAACCAGGGCCTGTTTACTACTGACCCTCCCATGATGGTTTCCAATACCTTTGAACCAGAAATCTATAATCATGAGGGCAAGGGAGCATACCGGTTCCAGTGCCCCAGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTtcaggatggagggagaaggagaggtgctCTATAGGACAGTCCACTGGGACAGGAAGCTTCTATCCCAGAGTGGAAAGAGGCCTGCAGGACCCCTGTTCAACATCGACTGTCCTCAGAAGTCTGTCTGTCAACTACACCTCCCACACTGTCAAATTCATTCTTaattgcaagttAACTCTACAGCTTCTACTGGGTTGGCACGCTGAAGGTACTGGttttgttctagcaagagaaggaacggcctcccactgtgataagtaCCTATCGGCAATAAGattctctgtgtgtttcatgCTTTAGACTTCCCTAAACAAGATTACTCTGATCATTTGTTGCCATACCTTGTTTGTCATTGTTATCGTAGTAGTAGCTTATATCAGAGAAAGCTCAGAATGTTATCTTTCTTCAGGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACATCATTGAGTTTCTCCCCCCCCATgagacaacagacacacatgTCATAATAAACATCACTGGATT

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939958.1 False 4765 mRNA 0.47 18 6203971 6244613
XM_036939959.1 True 4268 mRNA 0.47 14 6208137 6244613

Neighbor

gene id symbol gene type direction distance location
LOC118938516 NA coding downstream 12276 6188058 ~ 6191695 (-)
LOC118938167 LOC106564205 coding downstream 26966 6173844 ~ 6177005 (-)
LOC110512959 LOC106592278 coding downstream 36496 6152197 ~ 6167475 (-)
LOC110512397 LOC106592307 coding downstream 71289 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding downstream 145349 6044857 ~ 6058622 (-)
LOC110519908 LOC106592827 coding upstream 4297 6248910 ~ 6306407 (-)
LOC110485390 LOC106594684 coding upstream 184509 6429122 ~ 6450055 (-)
LOC110487211 LOC106564193 coding upstream 225860 6470473 ~ 6508696 (-)
LOC110485423 LOC106592905 coding upstream 300638 6545251 ~ 6584693 (-)
LOC118938537 NA coding upstream 347333 6591946 ~ 6593147 (-)
G1139898 NA non-coding downstream 72763 6129030 ~ 6131208 (-)
G1139905 NA non-coding downstream 102553 6056866 ~ 6101418 (-)
G1139981 NA non-coding upstream 43958 6288571 ~ 6302416 (-)
G1139994 NA non-coding upstream 72058 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 78914 6323527 ~ 6323756 (-)
G1140021 NA non-coding upstream 131202 6375815 ~ 6376564 (-)
G1140024 NA non-coding upstream 139031 6383644 ~ 6383868 (-)
G1139916 NA other downstream 110455 6092359 ~ 6093516 (-)
LOC118938515 LOC106592948 other downstream 531724 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 941458 5201055 ~ 5262513 (-)
LOC110485426 LOC106594040 other upstream 361706 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 453769 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 534635 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 600797 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 675116 6919729 ~ 6952206 (-)

Expression


Co-expression Network