LOC110519908 (LOC106592827)


Basic Information

Item Value
gene id LOC110519908
gene name LOC106592827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6248910 ~ 6306407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939984.1
GTTGACCCGGTCTGGAGAGAAGCATCACCAtctggagaggcagagggaggtgaCTAGGGCACTGGTCATCAAGTTTCCAGTGCCCCCATGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGtttaggatggagggagaggcagaggtgCTCTATATGACAGTCCCCTGGGACAGGATGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCCCTGTTCAAGTTTACATGCCTTAAGGGGTCTGTCAGTCAACTACACCTTCCACACTGTGAGATTCATTCTGaggGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACAGTATGGAGTTTCTCCATCACCATGAGACAAGAGAAACTcatgtcatattaaacatcaCTCAATTCAGCAAATATGGCATCACCAAGGATAAGgaagctcctgtctctcctatccgTGCTCTGGTGCTACTATTTTACAAACTCCCAGATGATAACAATAATTCCACCCTAAGTGTGTTGTTGCTGCCCAGAAATGTTGACATTGATGAGGTGTGTAAGACAAGGAGGACAAGGAATGGAGACCGAGAAATCTACATTGAAATAAATCCTAACTGTAGACTAACCCGGGACCAAGAATACACCCTCTCCACCGATCTAACAGATGAACATCACATAGATCCAGAGaatgcAGAGTTTGTGGATTATGATTCCTATACAAACTACATGCCAACATTTCAGTTGCGTTTAAAAACTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAACATGGCGGTCCTGAAAATGAACGTATATGGGACCGCCTTGTTTCACTACCAGttacacctccagaTGGCGCTAGAGCAGcatccaaactgCATGAACCTGCTGCTCCCCTTATGGACATTTCAACCCACCCCCCTCAACAGTCCACTCTGCCCCCCACCTCAATGaagctggTAGCCGCTTCTGAGAGGGAACAGAAGCCAGCAGGGGCAAAGAGGGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCGTCGCCATCTGGAAAGGAAGGGGGCTAAGGCACTGGCCATCAGGAGACCCTCCATGTTAGCTGTTCTAGACCTGCTGCTGACCACTCTGCAGGAGCTCACTGAAGAACAGCTGAAGACATTTCAGTCTCACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGGAGAGATATGGCCCTGAGGGAGCTGTGGAGATCACAGTGGAGATCCTGAGGGAGATGAATCAGCATGATCTCGCTAAGAAGTTACAAAGAGATCACAGAGGAAAGAAACAGAAAAAAATTACACCACCAGCTGGCAATGCAGCAGtttttaaagGGACGAAACCAAATGTTTCTTATCTGCTGCTGGGCACTCTGGCAGAGCTGGTTTCAGAAGAGCTGAAGTTATTTCAGTGGCACCTGATTCAGGGTGTGGAGGGCTTTACTTCAATCCCACGGGGCCAGCTGGAGAACGCTAACAGACTGGTCACAGTGGATAGGATGGTGCAGCAATACCACGAGGACGGTGCTGTGACGATCACACTAGAGATCCTGAGGAAGATGGACCAGAACAAAATGGCTGATGAGTTAGAGAAGAAGTTCCCAAACAATGTCTGAACTGTATACAGTATGTCTACAACTCTATATGCATTCGCACATCAAGTCTTCTCTTGAGATGGGCTCGGGGATGGAACAACGGTTGAACATCTGTGGTTGTTTGTGGGGGAAGGGTGgatagtgtgtgtgactgtgggtgtgtgtatgtatcccaCATATGTTGCTATGAGGTAATGGTGTTAGGGACAATATAGGATGAATCACAATAATTATTTGACATAATAATAATTGCTTgccaaaaatgtgatttttgtaATGCCAgtcctggttataggtaacaatcctttGTATGAACTGCCTAGATTATTGCTCATAACTATTTGTTAATTGTGGAAATAACACATTTGCAAATCATGTCTTCTCTTAagttgggctctgggatggaGCAACTGTTGAACATCTTTGTGAGAGAAGGGTGGTGTATGTATCCCACATCTGTTGCTATGGTGTCAGGGACAATATAGGAGGAATCACAAAAATTGTTTCCAAAATAATAATTGCttaccaaaaataaaaaaaatgcgtAAT
>XM_036939982.1
TTCATCAAAGCATTGTTGACAGTCACTCTGTTGTCATTGACAGTGTAGCAGAGTTGAAGATCACTAGTCCAACATAGACTCTGAGAACAACAAGGTTAACTTCTGTTATTAGAAAGgagctggTAGCTGCTTCTGAGAGGGAACAGATGCCAGCAGAGGCAGAGAGCGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCATCACCAtctggagaggcagagggaggtgaCTAGGGCACTGGTCATCAAGAGTTCTCCAGATGAATTTACACCTGAAATTCATGATCAGGACAACAGGGGAGAGTACCGTTTCCAGTGCCCCCATGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGtttaggatggagggagaggcagaggtgCTCTATATGACAGTCCCCTGGGACAGGATGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCCCTGTTCAAGTTTACATGCCTTAAGGGGTCTGTCAGTCAACTACACCTTCCACACTGTGAGATTCATTCTGaggGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACAGTATGGAGTTTCTCCATCACCATGAGACAAGAGAAACTcatgtcatattaaacatcaCTCAATTCAGCAAATATGGCATCACCAAGGATAAGgaagctcctgtctctcctatccgTGCTCTGGTGCTACTATTTTACAAACTCCCAGATGATAACAATAATTCCACCCTAAGTGTGTTGTTGCTGCCCAGAAATGTTGACATTGATGAGGTGTGTAAGACAAGGAGGACAAGGAATGGAGACCGAGAAATCTACATTGAAATAAATCCTAACTGTAGACTAACCCGGGACCAAGAATACACCCTCTCCACCGATCTAACAGATGAACATCACATAGATCCAGAGaatgcAGAGTTTGTGGATTATGATTCCTATACAAACTACATGCCAACATTTCAGTTGCGTTTAAAAACTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAACATGGCGGTCCTGAAAATGAACGTATATGGGACCGCCTTGTTTCACTACCAGttacacctccagaTGGCGCTAGAGCAGcatccaaactgCATGAACCTGCTGCTCCCCTTATGGACATTTCAACCCACCCCCCTCAACAGTCCACTCTGCCCCCCACCTCAATGaagctggTAGCCGCTTCTGAGAGGGAACAGAAGCCAGCAGGGGCAAAGAGGGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCGTCGCCATCTGGAAAGGAAGGGGGCTAAGGCACTGGCCATCAGGAGACCCTCCATGTTAGCTGTTCTAGACCTGCTGCTGACCACTCTGCAGGAGCTCACTGAAGAACAGCTGAAGACATTTCAGTCTCACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGGAGAGATATGGCCCTGAGGGAGCTGTGGAGATCACAGTGGAGATCCTGAGGGAGATGAATCAGCATGATCTCGCTAAGAAGTTACAAAGAGATCACAGAGGAAAGAAACAGAAAAAAATTACACCACCAGCTGGCAATGCAGCAGtttttaaagGGACGAAACCAAATGTTTCTTATCTGCTGCTGGGCACTCTGGCAGAGCTGGTTTCAGAAGAGCTGAAGTTATTTCAGTGGCACCTGATTCAGGGTGTGGAGGGCTTTACTTCAATCCCACGGGGCCAGCTGGAGAACGCTAACAGACTGGTCACAGTGGATAGGATGGTGCAGCAATACCACGAGGACGGTGCTGTGACGATCACACTAGAGATCCTGAGGAAGATGGACCAGAACAAAATGGCTGATGAGTTAGAGAAGAAGTTCCCAAACAATGTCTGAACTGTATACAGTATGTCTACAACTCTATATGCATTCGCACATCAAGTCTTCTCTTGAGATGGGCTCGGGGATGGAACAACGGTTGAACATCTGTGGTTGTTTGTGGGGGAAGGGTGgatagtgtgtgtgactgtgggtgtgtgtatgtatcccaCATATGTTGCTATGAGGTAATGGTGTTAGGGACAATATAGGATGAATCACAATAATTATTTGACATAATAATAATTGCTTgccaaaaatgtgatttttgtaATGCCAgtcctggttataggtaacaatcctttGTATGAACTGCCTAGATTATTGCTCATAACTATTTGTTAATTGTGGAAATAACACATTTGCAAATCATGTCTTCTCTTAagttgggctctgggatggaGCAACTGTTGAACATCTTTGTGAGAGAAGGGTGGTGTATGTATCCCACATCTGTTGCTATGGTGTCAGGGACAATATAGGAGGAATCACAAAAATTGTTTCCAAAATAATAATTGCttaccaaaaataaaaaaaatgcgtAAT
>XM_036939983.1
TTCATCAAAGCATTGTTGACAGTCACTCTGTTGTCATTGACAGTGTAGCAGAGTTGAAGATCACTAGTCCAACATAGACTCTGAGAACAACAAGGTTAACTTCTGTTATTAGAAAGgagctggTAGCTGCTTCTGAGAGGGAACAGATGCCAGCAGAGGCAGAGAGCGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCATCACCAtctggagaggcagagggaggtgaCTAGGGCACTGGTCATCAAGAGTTCTCCAGATGAATTTACACCTGAAATTCATGATCAGGACAACAGGGGAGAGTACCGTTTCCAGTGCCCCCATGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGtttaggatggagggagaggcagaggtgCTCTATATGACAGTCCCCTGGGACAGGATGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCCCTGTTCAAGTTTACATGCCTTAAGGGGTCTGTCAGTCAACTACACCTTCCACACTGTGAGATTCATTCTGaggGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACAGTATGGAGTTTCTCCATCACCATGAGACAAGAGAAACTcatgtcatattaaacatcaCTCAATTCAGCAAATATGGCATCACCAAGGATAAGgaagctcctgtctctcctatccgTGCTCTGGTGCTACTATTTTACAAACTCCCAGATGATAACAATAATTCCACCCTAAGTGTGTTGTTGCTGCCCAGAAATGTTGACATTGATGAGGTGTGTAAGACAAGGAGGACAAGGAATGGAGACCGAGAAATCTACATTGAAATAAATCCTAACTGTAGACTAACCCGGGACCAAGAATACACCCTCTCCACCGATCTAACAGATGAACATCACATAGATCCAGAGaatgcAGAGTTTGTGGATTATGATTCCTATACAAACTACATGCCAACATTTCAGTTGCGTTTAAAAACTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAACATGGCGGTCCTGAAAATGAACGTATATGGGACCGCCTTGTTTCACTACCAGttacacctccagaTGGCGCTAGAGCAGcatccaaactgCATGAACCTGCTGCTCCCCTTATGGACATTTCAACCCACCCCCCTCAACAGTCCACTCTGCCCCCCACCTCAATGaagctggTAGCCGCTTCTGAGAGGGAACAGAAGCCAGCAGGGGCAAAGAGGGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCGTCGCCATCTGGAAAGGAAGGGGGCTAAGGCACTGGCCATCAGGAGACCCTCCATGTTAGCTGTTCTAGACCTGCTGCTGACCACTCTGCAGGAGCTCACTGAAGAACAGCTGAAGACATTTCAGTCTCACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGGAGAGATATGGCCCTGAGGGAGCTGTGGAGATCACAGTGGAGATCCTGAGGGAGATGAATCAGCATGATCTCGCTAAGAAGTTACAAAGAGATCACAGAGGAAAGAAACAGAAAAAAATTACACCACCAGCTGGCAATGCAGCAGGGACGAAACCAAATGTTTCTTATCTGCTGCTGGGCACTCTGGCAGAGCTGGTTTCAGAAGAGCTGAAGTTATTTCAGTGGCACCTGATTCAGGGTGTGGAGGGCTTTACTTCAATCCCACGGGGCCAGCTGGAGAACGCTAACAGACTGGTCACAGTGGATAGGATGGTGCAGCAATACCACGAGGACGGTGCTGTGACGATCACACTAGAGATCCTGAGGAAGATGGACCAGAACAAAATGGCTGATGAGTTAGAGAAGAAGTTCCCAAACAATGTCTGAACTGTATACAGTATGTCTACAACTCTATATGCATTCGCACATCAAGTCTTCTCTTGAGATGGGCTCGGGGATGGAACAACGGTTGAACATCTGTGGTTGTTTGTGGGGGAAGGGTGgatagtgtgtgtgactgtgggtgtgtgtatgtatcccaCATATGTTGCTATGAGGTAATGGTGTTAGGGACAATATAGGATGAATCACAATAATTATTTGACATAATAATAATTGCTTgccaaaaatgtgatttttgtaATGCCAgtcctggttataggtaacaatcctttGTATGAACTGCCTAGATTATTGCTCATAACTATTTGTTAATTGTGGAAATAACACATTTGCAAATCATGTCTTCTCTTAagttgggctctgggatggaGCAACTGTTGAACATCTTTGTGAGAGAAGGGTGGTGTATGTATCCCACATCTGTTGCTATGGTGTCAGGGACAATATAGGAGGAATCACAAAAATTGTTTCCAAAATAATAATTGCttaccaaaaataaaaaaaatgcgtAAT

Function

NR:

description
uncharacterized protein LOC110516802

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939984.1 False 2234 mRNA 0.46 14 6248910 6279488
XM_036939982.1 False 2489 mRNA 0.46 17 6248910 6306407
XM_036939983.1 True 2480 mRNA 0.46 16 6248910 6306407

Neighbor

gene id symbol gene type direction distance location
LOC118938166 LOC106592843 coding downstream 4297 6203971 ~ 6244613 (-)
LOC118938516 NA coding downstream 57215 6188058 ~ 6191695 (-)
LOC118938167 LOC106564205 coding downstream 71905 6173844 ~ 6177005 (-)
LOC110512959 LOC106592278 coding downstream 81435 6152197 ~ 6167475 (-)
LOC110512397 LOC106592307 coding downstream 116228 6034358 ~ 6132682 (-)
LOC110485390 LOC106594684 coding upstream 122715 6429122 ~ 6450055 (-)
LOC110487211 LOC106564193 coding upstream 164066 6470473 ~ 6508696 (-)
LOC110485423 LOC106592905 coding upstream 238844 6545251 ~ 6584693 (-)
LOC118938537 NA coding upstream 285539 6591946 ~ 6593147 (-)
LOC110485426 LOC106594040 coding upstream 293734 6600141 ~ 6649233 (-)
G1139747 NA non-coding downstream 14087 6151587 ~ 6234823 (-)
G1139898 NA non-coding downstream 117702 6129030 ~ 6131208 (-)
G1139905 NA non-coding downstream 147492 6056866 ~ 6101418 (-)
G1139994 NA non-coding upstream 10264 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 17120 6323527 ~ 6323756 (-)
G1140021 NA non-coding upstream 69408 6375815 ~ 6376564 (-)
G1140024 NA non-coding upstream 77237 6383644 ~ 6383868 (-)
G1140025 NA non-coding upstream 77521 6383928 ~ 6384550 (-)
G1139916 NA other downstream 155394 6092359 ~ 6093516 (-)
LOC110512654 LOC106592307 other downstream 199970 6044857 ~ 6058622 (-)
LOC118938515 LOC106592948 other downstream 576663 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 986397 5201055 ~ 5262513 (-)
LOC118938170 LOC106564207 other upstream 391975 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 472841 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 539003 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 613322 6919729 ~ 6952206 (-)

Expression


Co-expression Network