LOC110485390 (LOC106594684)


Basic Information

Item Value
gene id LOC110485390
gene name LOC106594684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6429122 ~ 6450055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940004.1
CGGGGCGTGGAGAGCGAGCCAGTGCCgctctatatatatatccatcACTTAATACTCAGGATATTAACACTTGACGCTCGGTGACAGTAGCCGCGGTCACAGGCTCTCTCAGCCGCTTCAGACCCTCGCCACCTCAGCAGCAGCACAAGCAGCAGTAGCGGTAGAGGACAGAAGACTGAAAGATAGgcagtctctttctctcagctAGGCCATAGTCATTGTTGTAATCGTGATCGATGAGTCTGTCCGGGAAGCAGCGGTTCTCCGCCAACTCTTTCTCCGGGTTCGGGAGCCGGAAGATGGCATTGTCCTCCGCCGGGGGTTCGTCAATGCGCTCCAGCTTCGGGAGCAGAATGGGCTTTGGAGACGGTGGAGGAGGAGGGTTCAGGATGTCATCCTCCAGCCACATGGCAGGTCTGGGGAGTGGGATGAGCACCGGTGGCAGTGGCAGCGGGATGTTcggtggtggtggaggcggtGGAGGAGGAGGTTTCGGGTACGGTGGAGGTGTTGAGGACACGTCCCTCGGGTTCGCCGGTAACGAGAAGCAGCACATGCACAACCTGAACGACCGCCTGGCAACCTACATGGAGAAGGTTCGCCAGCTGGAGGCCACCAACCACCAGCTGGAGGAGAAGCTGAAGACCTTCACCTTCAACAAGGTGGAGGCGCACGACCTGACCATCTACGACGCAACACTCAAACCACTCATGGAGCAGcTCATGGGTTTCCTGATACAGAACACTCAGATTGCTGTGGAGATCGACAACGCCAAGCTGACTGCTGACGACTTCAGAGTCAAGTGGGAGAATGAGCTGTCTTTGCGCCAGTGTGTGGAGGGGGACATCGGAGGTCTGAGGAACCTGCAGCGGGAGTTTGAGATGAACATCACAGCCATGATGCAGGACCTGCAGGGGTACGAGAACGAACGGGTCTCCATGGCGAAGAGCCATGAAGAGGAGCTGTTGTCCATGCGTGGGGGGATGACGGGCCAGGTGAACGTGGATGTCCAGGCTACTAAGAGCCAGGACCTGTCTCTGATGCTGGCTGAAGTCAGGTCGGAGTACGAGGCGGCCGTGGAGAAAAACCGCAGACAGGCCGAGGCCTGGTACATGAAACAGgtggAGATGAAGCAGGCAGAGTCGGCGGTGGTGATGGAGACGACCACGACGACCACGTCGGAGATGACAGAGTTACGGAACCGCTACCAGACCCTACAGATGGAATACCAGGGACTACGTATGGGgATGGCGAACCTAGAGGCCAGGCTGTTGGAGGTTCAGTCCCAGTTCCAGCAACGTCTGTCTGGGTATAGTGGCAAGGTGATGGGCCTGGAGGGAGAACTGACCTCCATAAGGGCCAGCACCACTGAGCAGAGCCAGGACTACCAGATCCTTCTGAACATCAAGAGTCGTCTAGAGATGGAGATCCAGCAGTATAAGCATCTGCTGGAGGGAGCCGGCCTGGGAGGGGGCATGGTCCCTGGAGGGGCTGACCTGGGAGGGGGCATGGTGGTCTCTGGAGGGGCCGGGAGGTCGGCAGGTAAGGCTGTTGTGACCAGGACCACTGTGTTGGAGGTGAAATCCTCGGGAGGAGGAGTGGGGACGGGAGGAAGCTCCATGTTGATGCATTCCACTAGCTCCACCTCCAGCAGTTCTGGGGGCGGGGCAGCCATGCTGTCATCAGGAGGCGCCGCGATGGTGTCCGTCAGGGGACCAGCCATGCTGTCATCAGGAAGCCCCGCAATGGTGTCTGGCAGCGGATCAGCCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGCGGCACGGCGCCATCAGCAGGCGGCACGGCCCCATCAGGAGGCGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGTCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCCGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGTAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGACCCCATCAGCAGGAGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCGGGAGGCGGCACGGCGCCATCGGGAGGCGGCACGGCGCCATCGGGAGGCGGCACGGCGCCATCGGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGTGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCTCCATCAGCAGGAGGCAAGGCGCCATCAGCAGGAGGCACGGTGCCATCAGCAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCTCCAGCAGCAGACGGCACAGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGTGGGggaccagctctgatgtcatcaGGAGGCGTCACAATGGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCGATAGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCAATGGTGTCCGGTGGGggaccagctctgatgtcatctGGAGGAGCCGCGATGGTTTCCAGCGTGGGCCCAGCCACGGTGTCATCAGGAGGTGCTGCAATGGTGTCATCGGGCGGGGGCATGACCGTGTCCGGTAGCAACTCGTCTTCCACCAGCGTGTTGACCAGCTCCACCATGGAAGgTAAAGTCTCTACTGGTGATATTGCCATAGTTCCCATATAGTGATTCCCTTCTCTGATTCACGTCACAACACTCTCCAGGACCACGgaaccccctacacacacacacacacacacacacaccacacacacacacacacacacacacacacacacacacacacacacgtagcctctctctactactaacacacagctcacaTTCTGACCTGAACATCATGACGTGTAGCCTCTCTCTACTACTAACACACAGTCCACATTCTGACCTGAACATCATGACGTGTAGCCTCTCTctactactaacacacagctcacaTTCTGACCTGAACATCATGACGTGTAGCCTCTCTctactactaacacacagctcacaTTCTGACCTGAACATCATGACGTGTAGCCTCTCTctactactaacacacagctcacaTTCTGACCTGAACATCATGACGTGTcacttctctctcttctgtttaaTTTAAATTACATTTGACGTTTCCATTTATAATAAAAACCTGACCCTACAATGAGATGTTGTTTTTCTTTGTGTTTCATTATTAAAGATGACGCTGCATTGATCGTGTGTTAAATC

Function

NR:

description
PREDICTED: keratin, type I cytoskeletal 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940004.1 True 3839 mRNA 0.61 9 6429122 6450055

Neighbor

gene id symbol gene type direction distance location
LOC110519908 LOC106592827 coding downstream 122715 6248910 ~ 6306407 (-)
LOC118938166 LOC106592843 coding downstream 184509 6203971 ~ 6244613 (-)
LOC118938516 NA coding downstream 237427 6188058 ~ 6191695 (-)
LOC118938167 LOC106564205 coding downstream 252117 6173844 ~ 6177005 (-)
LOC110512959 LOC106592278 coding downstream 261647 6152197 ~ 6167475 (-)
LOC110487211 LOC106564193 coding upstream 20418 6470473 ~ 6508696 (-)
LOC110485423 LOC106592905 coding upstream 95196 6545251 ~ 6584693 (-)
LOC118938537 NA coding upstream 141891 6591946 ~ 6593147 (-)
LOC110485426 LOC106594040 coding upstream 150086 6600141 ~ 6649233 (-)
LOC110511140 LOC106564086 coding upstream 205489 6655544 ~ 6678570 (-)
G1140058 NA non-coding downstream 12395 6416339 ~ 6416727 (-)
G1140057 NA non-coding downstream 12843 6414904 ~ 6416279 (-)
G1140026 NA non-coding downstream 40436 6386555 ~ 6388686 (-)
G1140025 NA non-coding downstream 44572 6383928 ~ 6384550 (-)
G1140024 NA non-coding downstream 45254 6383644 ~ 6383868 (-)
G1140067 NA non-coding upstream 2994 6453049 ~ 6453272 (-)
G1140052 NA non-coding upstream 19753 6469808 ~ 6470298 (-)
G1140068 NA non-coding upstream 38833 6488888 ~ 6489315 (-)
G1140087 LOC106564225 non-coding upstream 73562 6523617 ~ 6524037 (-)
G1140096 NA non-coding upstream 118870 6568925 ~ 6570828 (-)
G1139916 NA other downstream 335606 6092359 ~ 6093516 (-)
LOC110512654 LOC106592307 other downstream 380182 6044857 ~ 6058622 (-)
LOC118938515 LOC106592948 other downstream 756875 5671437 ~ 5678473 (-)
G1138553 LOC106592646 other downstream 1166609 5201055 ~ 5262513 (-)
LOC118938170 LOC106564207 other upstream 248327 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 329193 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 395355 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 469674 6919729 ~ 6952206 (-)

Expression


Co-expression Network