LOC118938170 (LOC106564207)


Basic Information

Item Value
gene id LOC118938170
gene name LOC106564207
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6698319 ~ 6717102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940049.1
GCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACAACGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCCCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGaccCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCTCAATGACCTTTCATCTCCGACCTCAACAACGTCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATATTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTcatggttaaaaaatatataataaggAAGTATGGTTACCGGTCACTGGTTATATCTGTATATTGTGCCTTGCATGCaagtaaaaacaaataaaataccaaatagtt
>XM_036940050.1
TGCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACAACGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCCCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGactCCAACAAACACTCTGAAATACCATGAGTctaaactgtctctctctcctcctagaccCCAACAAACACTCTGAAATACCATGAGTcta
>TU1299773
ctgttaccttagacctcccacccaggtgagactaggttaggtgagactgttaccttagacctcccacccaggtgagactaGGTTAGGTGAGACTGTTACCTCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGaccCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCTCAATGACCTTTCATCTCCGACCTCAACAACGTCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATATTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTcatggttaaaaaatatataataaggAAGTATGGTTACCGGTC
>TU1299774
CAAACACTCTGAAATACCACGAGTctaaactgtctctctctcctcctagaccCCAACAAACACTCTGAAATACCACAAGTctaaactgtctctctctcctcctagactCCAACAAACACTCTGAAATACCATGAGTctaaactgtctctctctcctcctagaccCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCTCAATGACCTTTCATCTCCGACCTCAACAACGTCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATATTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTcatggttaaaaaatatataataaggAAGTATGGTTACCGGTC

Function

NR:

description
multivesicular body subunit 12A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940049.1 False 1837 mRNA 0.48 10 6698319 6717101
XM_036940050.1 False 966 mRNA 0.52 9 6701003 6717102
TU1299773 False 1183 TUCP 0.46 5 6698382 6708978
TU1299774 True 1060 lncRNA 0.43 2 6698382 6700213

Neighbor

gene id symbol gene type direction distance location
LOC110511140 LOC106564086 coding downstream 19749 6655544 ~ 6678570 (-)
LOC110485426 LOC106594040 coding downstream 49086 6600141 ~ 6649233 (-)
LOC118938537 NA coding downstream 105172 6591946 ~ 6593147 (-)
LOC110485423 LOC106592905 coding downstream 113626 6545251 ~ 6584693 (-)
LOC110487211 LOC106564193 coding downstream 189623 6470473 ~ 6508696 (-)
LOC110510388 LOC106592846 coding upstream 62904 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 coding upstream 125369 6842471 ~ 6853303 (-)
LOC118938173 NA coding upstream 155443 6872545 ~ 6874113 (-)
LOC110513509 LOC106593154 coding upstream 262037 6923538 ~ 7083659 (-)
LOC110485501 LOC106596103 coding upstream 567614 7284716 ~ 7290833 (-)
G1140102 NA non-coding downstream 99287 6598802 ~ 6599032 (-)
G1140101 NA non-coding downstream 103268 6594680 ~ 6595051 (-)
G1140100 NA non-coding downstream 105539 6591513 ~ 6592780 (-)
G1140099 NA non-coding downstream 107217 6590790 ~ 6591102 (-)
G1140134 NA non-coding upstream 19814 6736916 ~ 6737218 (-)
G1139998 NA non-coding upstream 61274 6778376 ~ 6778963 (-)
G1140150 NA non-coding upstream 68135 6785237 ~ 6785670 (-)
G1140151 NA non-coding upstream 84522 6801624 ~ 6802096 (-)
G1140154 NA non-coding upstream 89617 6806719 ~ 6814763 (-)
G1139916 NA other downstream 604803 6092359 ~ 6093516 (-)
LOC110512654 LOC106592307 other downstream 649379 6044857 ~ 6058622 (-)
LOC118938515 LOC106592948 other downstream 1026072 5671437 ~ 5678473 (-)
LOC118936520 NA other downstream 1453915 5216411 ~ 5244441 (-)
G1140208 LOC106598633 other upstream 202627 6919729 ~ 6952206 (-)
G1140269 NA other upstream 321775 7038877 ~ 7042520 (-)
G1138553 LOC106592646 other downstream 1435869 5201055 ~ 5262513 (-)

Expression


Co-expression Network