LOC118938520 (LOC106596103)


Basic Information

Item Value
gene id LOC118938520
gene name LOC106596103
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7413426 ~ 7423027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942565.1
CTGTACCCCATTTACAGTTTATACTTCAATGTATCAGGTGGAGTTATTCACCAGCTATAGAgtgagttgttgtttatgtttctaagactgcagggtgggagatgcaacaatggccttgagaacagcaggaagtgtgttggtggtctttctctggtctgtagcagTGGTACTGGGTCAATATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAAGGGTCAACAGTGGAGATGTCCTGCACTTACACATATCCCAGTGGTACAGTCACAACAACCTTCTGGTTCCTAAAAAATAATGCTGAGGGGAATCCTGTTAGTCTGAGTGGTGAGCCAGACTACAAAGGTCGTGTGATGTACCATAGAGATAAGAAGAATGGCCACACCCTGACAATCACAAACCTGAGAGAGAGTGACTCAGCTACGTACAAGTTCAGATTTATAACAGACCAGACCGGAGGGagatatactggcagtcctggagtcactctgtctgttacagACctgcaggtgaaggtgactcCTTATTCACGGATGTCAACATGGAAGAgactgacctgtagcaccaccAGCTGTCCTCTGACTGGtaaccccacctacatctggtacaagaacggacagGTTGTAACTGAGAACACTTTACCCTACTCAGTCTACCCTAATGCTGTAGACAGCTACTTCTGTGCTGTAAAAGACCATGAGGATCTTcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCTACAGAGTGACTTACACCAAGAGGAGAATCTGTGCCCTGAAGGGGTCAACTGTGGACATATCCTGTACTTATGTTGGTTTTTATAACACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGAACCAGGGTATGCAGGTCGTGTGGTGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACATACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGACTGTCACAGACCTGCAGGTGAATTTGACTCCTGGCACAGTGACAGAAGGATCATGGGTTACACTgacatgtagcaccacctgtactctaaCTGAAATCCccaaccccacctacatctggtacatGAACGGAGAATATCTATTTTCTGACTCCTCTTCCCAGTATCAATACTCAGTCAGTAGAGGAGGTTCTGACAGCTACTCCTGTGCCTTAAGAGGCCATGACAAACTCAGCTCTCCTGAAGTCACAGTGGATACTTCTTCTCTGAGCTGCTTAAGGGTGACCTACACCAGTAGAAGCATTTGTTCCTTGATACCATCCGTGGACCTGCCTTGCACTGCCATATATCCCACAGACctgcaggtgaaggtgactcCTGACACAAAGGCATGGAAGAggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctgggACAGGAACGGACAGTCTCTTGCTTGGCTCACTTCCCAACAACACTCTGTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtgtgttCAGGGTCACAACTGCTGGAGGGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGAACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAACACCCTGTAGATGTCAGGTCATATCCAGAGTCTGCAGGTCGTGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCGGCTGAATACAAATTCAGATTACTAACGACAGATGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCAAATGTACAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAGTCACCAGTTATAACAGCCTGATCCTAGACCCAGTTACCAGTtataacagactgatcctagaCCCAGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCCTAGAGAGAATCCTCTCTCCAGAAGAGACTCTCACTGTCAGATGGAAACAAATATCAGTTCTGACTGCAGCTGTAGGAATCATTGTTGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAAGAAGAACTCCACATCCACCTCCAACACAAGAGACACAGCAGATGATGGACAGGGAGACACTAGTCCAGTGAATGACAATGTCTCAAACATGGCCATGACCCCTACTGCAGCACAGACAGAGTACACATACGACCAGGATGATGTTCACTACGCCAGCGTCCACTTCTCTCACTCCAAAAACCAGGAAGTGCCTCTGTACTCCACCGTCCAGCTGCATCAACCACAGAAACAGGACCAAGATGACCAATACGCTGCTGTGAAATTCAAACTCCCCAGTTCTGCCACCCAGTGA
>TU1300240
ctgacctgtagcaccaccAGCTGTCCTCTGACTGGtaaccccacctacatctggtacaagaacggacagGTTGTAACTGAGAACACTTTACCCTACTCAGTCTACCCTAATGCTGTAGACAGCTACTTCTGTGCTGTAAAAGACCATGAGGATCTTcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCTACAGAGTGACTTACACCAAGAGGAGAATCTGTGCCCTGAAGGGGTCAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942565.1 False 2635 mRNA 0.48 12 7413426 7423027
TU1300240 True 242 lncRNA 0.50 2 7418421 7418799

Neighbor

gene id symbol gene type direction distance location
LOC110519431 LOC106596103 coding downstream 9668 7316314 ~ 7403758 (-)
LOC118938181 NA coding downstream 71746 7341076 ~ 7341680 (-)
LOC110485501 LOC106596103 coding downstream 122593 7284716 ~ 7290833 (-)
LOC110513509 LOC106593154 coding downstream 413072 6923538 ~ 7083659 (-)
LOC118938173 NA coding downstream 539313 6872545 ~ 6874113 (-)
LOC118938180 NA coding upstream 11459 7434486 ~ 7436102 (-)
LOC118938174 LOC106592614 coding upstream 20590 7443617 ~ 7496780 (-)
LOC110493310 LOC106591489 coding upstream 77341 7490185 ~ 7534632 (-)
LOC118938177 LOC106591664 coding upstream 107036 7530063 ~ 7564833 (-)
LOC118938179 NA coding upstream 122879 7545906 ~ 7546579 (-)
G1140372 NA non-coding downstream 44540 7322699 ~ 7368886 (-)
G1140387 NA non-coding downstream 60628 7340910 ~ 7352798 (-)
G1140408 NA non-coding downstream 86581 7324780 ~ 7326845 (-)
G1140404 NA non-coding downstream 97858 7311738 ~ 7315568 (-)
G1140378 NA non-coding downstream 130960 7281966 ~ 7282466 (-)
G1140386 NA non-coding upstream 6935 7429962 ~ 7431803 (-)
G1140448 NA non-coding upstream 35200 7458227 ~ 7461103 (-)
G1140457 NA non-coding upstream 76175 7499202 ~ 7681666 (-)
G1140458 NA non-coding upstream 86206 7509233 ~ 7510495 (-)
G1140343 NA other downstream 166776 7245712 ~ 7246650 (-)
G1140323 NA other downstream 221183 7190696 ~ 7192243 (-)
G1140367 LOC106601621 other upstream 44819 7409260 ~ 7695746 (-)
G1140368 LOC106591490 other upstream 236670 7659697 ~ 7730493 (-)
LOC110485610 hoga1 other upstream 635919 8058941 ~ 8080347 (-)
G1141490 NA other upstream 908108 8331135 ~ 8332518 (-)

Expression


Co-expression Network