LOC110493310 (LOC106591489)


Basic Information

Item Value
gene id LOC110493310
gene name LOC106591489
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7490185 ~ 7534632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940081.1
GTGATAAAGGGATTTACAGTGATATTGTTTTTTCTCCAGGTCTTCAGGTGAAGGTGACTGGTGGACATCAGGATAAGACACTGACCTGtatcaccacctgtactctggctgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCTCTCTCCTGCAGTGTGTGTTCAGGGTCAGAGCTGCAGCAGAGTGAATTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATGATTACATCACATCAACATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATTTGAAGGTCCCTTCATCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACATACAGCATTGAATGGGGTCATAGTTTCCCAGGAACAACTCTGACTGTCacagACctgcaggtgaaggtgactcCTGGCACAGTGACAGAAGGATCATGGGTTATACTgacatgtagcaccacctgtactctgactgaaATCCccaaccccacctacatctggtacatGAACGGAGAATATCTATTTTCTGACTCCTCTCCCCAGTATCAATACTCAGTCAGTAGAGGAGGTTCTGACAGCTACTCCTGTGCCTTAAGAGGCCATGACAAACTTAGCTCTCCTGAAGTCACAGTGGATACTTCTTCTCTGAACTGCTTGAGTGTGACCTACACCAGTAGAAGCATCTGTTCCTTGATACCATCCGTGGACCTGCCTTGCACTGCCATATATCCCACAGACctgcaggtgaaggtgactcCTGACACAAAGGCAGGGAAGAggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctgggACAGGAACGGACAGTCTCTTGCTTGGCTCTCTTCCCAACAACACTCTCTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtgtgttCAGGGTTACAACTGCTGGAGGGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGGACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATGTCAGGTCATATCCAGAGTATGCAGGTCGTGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCAGCTGAATACAAATTCATCTTAATAACAACAGATGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCAAATGTACAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAGTCACCAGTTATAACAGCCTGATCCTAGACCCAGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCTTAGAGAGAATCCTCTCTCCAGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAACATCAGTTGTGACTGCAGCTGTAGGAATCATAGTGGTTGTTCTGATTCTCATCCTCTGTTTCTCTGGATTCATGTGGTTCAGGAGATCCACAGGAGGAAGTGATGCCACAGCAGACACACAGagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGCTCTGAACATGAGGACCATGTCCCCTGACTATGACACTCTGATAAGTGTCCATCCTGACCCTAACAGTGATACGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaAATGTGAGGGGAATCTCCCACTGAAGAGTATcaccacagaacctggactgaagagaacaaccacagatcctggactgaagagaagcaCCATagatcctggactgaagagaggcaccacagatcctggactgaagagaaccaccacagatcccagactg
>TU1300133
TGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGGACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATGTCAGGTCATATCCAGAGTATGCAGGTCGTGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCGGCTGAATACAAATTCAGATTAATAACAACAAACGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCCAATGTACAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAATCACCAGT
>TU1300132
TGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGGACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATGTCAGGTCATATCCAGAGTATGCAGGTCGTGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCAGCTGAATACAAATTCATCTTAATAACAACAGATGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCAAATGTACAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAGTCACCAGTTATAACAGCCTGATCCTAGACCCAGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCTTAGAGAGAATCCTCTCTCCAGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940081.1 False 2458 mRNA 0.48 13 7500368 7534632
TU1300133 False 449 lncRNA 0.46 3 7490185 7504699
TU1300132 True 653 TUCP 0.47 3 7502391 7504699

Neighbor

gene id symbol gene type direction distance location
LOC118938174 LOC106592614 coding downstream 3588 7443617 ~ 7496780 (-)
LOC118938180 NA coding downstream 64266 7434486 ~ 7436102 (-)
LOC118938520 LOC106596103 coding downstream 77341 7413426 ~ 7423027 (-)
LOC110519431 LOC106596103 coding downstream 96610 7316314 ~ 7403758 (-)
LOC118938181 NA coding downstream 158688 7341076 ~ 7341680 (-)
LOC118938179 NA coding upstream 11274 7545906 ~ 7546579 (-)
LOC118938178 LOC106601621 coding upstream 32315 7566947 ~ 7567941 (-)
LOC118938521 NA coding upstream 44042 7578674 ~ 7699845 (-)
LOC110494997 LOC106598058 coding upstream 90520 7625152 ~ 7671859 (-)
LOC118938175 LOC106564328 coding upstream 138140 7672772 ~ 7698366 (-)
G1140448 NA non-coding downstream 39265 7458227 ~ 7461103 (-)
G1140370 LOC106591489 non-coding downstream 48699 7415596 ~ 7451669 (-)
G1140410 NA non-coding downstream 68141 7327649 ~ 7432227 (-)
G1140386 NA non-coding downstream 68565 7429962 ~ 7431803 (-)
G1140471 NA non-coding upstream 12107 7546739 ~ 7547126 (-)
G1140473 NA non-coding upstream 35219 7569851 ~ 7570855 (-)
G1140486 NA non-coding upstream 73932 7608564 ~ 7642221 (-)
G1140375 NA non-coding upstream 113481 7648113 ~ 7697970 (-)
G1140343 NA other downstream 253718 7245712 ~ 7246650 (-)
G1140323 NA other downstream 308125 7190696 ~ 7192243 (-)
LOC110513509 LOC106593154 other downstream 418913 6923538 ~ 7083659 (-)
G1140368 LOC106591490 other upstream 125065 7659697 ~ 7730493 (-)
LOC110485610 hoga1 other upstream 524314 8058941 ~ 8080347 (-)
G1141490 NA other upstream 796503 8331135 ~ 8332518 (-)
G1141517 NA other upstream 891981 8426613 ~ 8452319 (-)
G1141579 NA other upstream 1056333 8590965 ~ 8592898 (-)
LOC110485501 LOC106596103 coding downstream 199352 7284716 ~ 7290833 (-)
LOC118938177 LOC106591664 coding upstream 25364 7530063 ~ 7564833 (-)
G1140458 NA non-coding upstream 4534 7509233 ~ 7510495 (-)
G1140461 NA non-coding upstream 10590 7515289 ~ 7646844 (-)

Expression


Co-expression Network