LOC118938521


Basic Information

Item Value
gene id LOC118938521
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7578674 ~ 7699845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942567.1
ctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttaggcagccatcttctttgggtatttcgtgggttatcaTCTATGTCTATGTGATGGTGCATGTTAGCACTCAGTTTGTTTAGAGGTCgtcttgttagtttgtttagtgtactaCGTGTTTTTTTTGTCCGTTCATTAAAgtatgcattcacaccacgcagCATTTTGGTCTCCTCAATACAACGATCGTGACagacactttgtgaatatggACCCTGGACTGTTTTTAATGTATCAGGTGGAGTTATTCACCAGCTATAGATGTTACTGGGTCAGGTTGGCAGGAGTGTGACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCAACAGTAGAGCTGACCTGCTCTTATACATATCCCAGTGGCTATACAATCACAACAACCTTCTGGTTCACTAAAAATGATGCTGAGGGGAATCCTGTGACTCTGAGTGATGACCCAGACTACACAGGTcatgtgatgtactgtagcaaCAAGAAGAATGGCCACACCCTGACAATCAGAGATCTGAGAGAGTGTGACTCAGCTATGTACAAGTTCAGCTTTATAACAGATCAGACCGTAAGgaaatatagtggtgatcctgGAGTCATTCAGTCTGTCACAGAGTGTCCATCCTGACCCTaactgggacacacacaccactgaaaaTGAGGACCAGACACTCTGCCAGTAGTGACACGTtcacatctcctcagagagacgCTCAGCACACCGTATATCAGACCATCCAGGGGAGAaaaccaccacagaacctggagggaagagaaccaccacagaacctggagggaagagaaccaccacagaacctggagGGAAGAGAACCACCACTGAACCtagactgaagagaaccaccacagaacctggactgagagaaccatcacagaacatggactgaagagaaccaccataGAACATGGACTAAAGAGCTATGGCACCAAACCAAAGCCAGACCTTACACCTCTATTCTCTTACTAATATATTGTTATCATATCTTGAAGTTTCACCCAAGCtacaaaatgacacattggtttccCTTCCCTTTTAGCAGTCTATGAACATGGTGTGACACCAGTCCCTGCTTTGTTTTAGTTTCCCCTGACACTGTTTCCACTAGCTAACGTTTTAGCATtcgtggcacaaatcccattcgtCATGTGACTAATAAGAGGCATTTCTCGCACATCATTTAAAAATCaatcaaaagtttaaaaaaaatgcgtTGTGAAGCTCAAAGTCACTTCCagatgatttgaacatgatgTGAGAATGTTAATATGTGAAATCTTAACATCAGTCCcgtgacttgaatgggatttttGTAAATGTGGGAGTGTTCGACATTGCAGCCAACTTTATAGGCAAGTCgagatctacaaatcaccttgcatgaTGAATAACTACTCAATATTATTAATAGaccagtcagtcacaatttacccatgatacatcAGTTTTGATGTTCTCGAACACTATCTGAGTGACTGCGGAAGGAAGCCCTCTCTGCATAAGCTTCTTGGTCCCTGACATAGAGTTGGATAGAAGGTACATCTTGACATCTTTGTCATGATGTCTTCTGTGACAGAATGAGCAGCACCATTGAGGGCTATTTCCATATTAAAGTAGTTAATATCTTCAACTTCCATAAGTTTAATAACAGTCTTCATACCAACTGAAATGGTGTATTCAATGGCTtagtcatgctaaaacaggctttGAAGCAAGTACGCCCTCTACTCAACTCTATTGTCCCTGACTGCTTCAAAGTTGTGTCAGCCACAGACTTCAAACCTCCAACCACACACTCATTGTCTATTTATATAGACTTCCAGTAAGCTAACTTACAACACATCTCCCCTTCACTCTACTGCAGGGTGGGAGATGTAACAATGGCCTTGAGAACAGCAGGAAGTGTGTTGgtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGAATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTACAGTCACAACAACACTCTGGTTCACTAAAATGGAGGCTGGTAAAGAACCTAAAGATCTAGGTCAGAACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGGGTTAAGAAGAAAGACTGCACCCTGACAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAAGAAGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgtaacagCTCTGCAGGTGAAGATAACTTCTAAAACTTTGCAAAATTGGGtgacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacacAAAGTAAAGGAGGACACCTCCAGCCTGTACTCAGACTACTTTAGTGATGCAGACAgttactcctgtgctgtaaaagGCCACGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAAACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGTCTATCACAGGTctgcaggtgaagagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGGTCTGAACATGAGGACCATGTCCCCTGACTATGACACTCTGGCAAGTGTCAATCCTGACCCTAACAGTGACCCCAACAGTGACATGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaACACATGATGGCGACATTGAATCATTTAACCATGAGTGGCTCGGCCAGCGTCTCCTcaactcagtcctggggaccccaagGTGA
>TU1300170
CATAACCTCGGCTGAtagaaccaccacagaacctggactgaagagaaccaccacagaacctggactgaagagaaccaccacagaacatggaCTGAAGAAaaccaccacagaacatggaCTAAAGAGAACCATcacagaacATGGACTAAAGAGCTATGGCACCAAACCAAAGCCAGACCTTACACCTCTATTCTCTTACTAATATATTGTTATCATATCTTGAAGTTTCACCCAAGCtacaaaatgacacattggtttccCTTCCCTTTTAGCAGTCTATGAACATGGTGTGACACCAGTCCCTGCTTTGTTTTAGTTTCCCCTGACACTGTTTCCACTAGCTAACGTTTTAGCATtcgtggcacaaatcccattcgtCATGTGACTAATAAGAGGCATTTCTCGCACATCATTTAAAAATCaatcaaaagtttaaaaaaaatgcgtTGTGAAGCTCAAAGTCACTTCCagatgatttgaacatgatgTGAGAATGTTAATATGTGAAATCTTAACATCAGTCCcgtgacttgaatgggatttttGTAAATGTGGGAGTGTTCGACATTGCAGCCAACTTTATAGGCAAGTCgagatctacaaatcaccttgcatgaTGAATAACTACTCAATATTATTAATAGaccagtcagtcacaatttacccatgatacatcAGTTTTGATGTTCTCGAACACTATCTGAGTGACTGCGGAAGGAAGCCCTCTCTGCATAAGCTTCTTGGTCCCTGACATAGAGTTGGATAGAAGGTACATCTTGACATCTTTGTCATGATGTCTTCTGTGACAGAATGAGCAGCACCATTGAGGGCTATTTCCATATTAAAGTAGTTAATATCTTCAACTTCCATAAGTTTAATAACAGTCTTCATACCAACTGAAATGGTGTATTCAATGGCTtagtcatgctaaaacaggctttGAAGCAAGTACGCCCTCTACTCAACTCTATTGTCCCTGACTGCTTCAAAGTTGTGTCAGCCACAGACTTCAAACCTCCAACCACACACTCATTGTCTATTTATATAGACTTCCAGTAAGCTAACTTACAACACATCTCCCCTTCACTCTGTAAGTATGCTTGACTATATcttaaaatatgtttattttatcaTTTGTTTGTTTCCATGAACTTCTGTATCCTGTTATGAGCATGGCGATGCTATtgtaatgtatgttttgtttttctgttaTTTACAGTATACTCTGTAGATGTATTTCTGCGTATATTAATCTGATACAGTATTGTACATGGGGTTACAGATATAATACTTTAGCATGGTATTTTAAGGACTCTGACAGCAATAGATTGTTGTGGAGACTTGTTTGAAAATAGCCTAAAGTAAGATTGAGAGTAACAGAGATTAGGTGTATGCTTCGTAAGAGCTTTAGGAGTaatattaacatgagacacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagtcacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagtcacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtcgTATAAAcctgagacacagtgatggtgggtgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatagtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacataaGACACAGTGATggagggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942567.1 False 3172 mRNA 0.45 13 7578674 7654174
TU1300170 True 2343 lncRNA 0.39 3 7649984 7699845

Neighbor

gene id symbol gene type direction distance location
LOC118938178 LOC106601621 coding downstream 10733 7566947 ~ 7567941 (-)
LOC118938177 LOC106591664 coding downstream 13841 7530063 ~ 7564833 (-)
LOC118938179 NA coding downstream 32095 7545906 ~ 7546579 (-)
LOC110493310 LOC106591489 coding downstream 44042 7490185 ~ 7534632 (-)
LOC118938174 LOC106592614 coding downstream 81894 7443617 ~ 7496780 (-)
LOC118938175 LOC106564328 coding upstream 18598 7672772 ~ 7698366 (-)
LOC118938176 LOC106592614 coding upstream 28792 7682966 ~ 7689906 (-)
LOC110493317 LOC106591490 coding upstream 60199 7714373 ~ 7733873 (-)
LOC118938522 LOC106591490 coding upstream 79871 7734045 ~ 7736476 (-)
LOC118938183 LOC106591333 coding upstream 271759 7925933 ~ 8006473 (-)
G1140473 NA non-coding downstream 7819 7569851 ~ 7570855 (-)
G1140471 NA non-coding downstream 31548 7546739 ~ 7547126 (-)
G1140458 NA non-coding downstream 68179 7509233 ~ 7510495 (-)
G1140368 LOC106591490 non-coding upstream 5523 7659697 ~ 7730493 (-)
G1140498 NA non-coding upstream 11537 7665711 ~ 7667999 (-)
G1140499 NA non-coding upstream 11743 7665917 ~ 7672113 (-)
G1140504 NA non-coding upstream 42373 7696547 ~ 7710867 (-)
G1140526 NA non-coding upstream 96620 7750794 ~ 7751003 (-)
G1140343 NA other downstream 332024 7245712 ~ 7246650 (-)
G1140323 NA other downstream 386431 7190696 ~ 7192243 (-)
G1140269 NA other downstream 536154 7038877 ~ 7042520 (-)
LOC110485610 hoga1 other upstream 404772 8058941 ~ 8080347 (-)
G1141490 NA other upstream 676961 8331135 ~ 8332518 (-)
G1141517 NA other upstream 772439 8426613 ~ 8452319 (-)
G1141579 NA other upstream 936791 8590965 ~ 8592898 (-)
LOC110518530 LOC106591329 coding upstream 398664 8098509 ~ 8119143 (-)
G1140461 NA non-coding downstream 3140 7515289 ~ 7646844 (-)
G1140486 NA non-coding downstream 7763 7608564 ~ 7642221 (-)
G1140436 NA non-coding downstream 26984 7407978 ~ 7623000 (-)
G1140531 NA non-coding upstream 57092 7756937 ~ 7761076 (-)
G1140558 NA non-coding upstream 129278 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 133526 7833371 ~ 7833723 (-)
G1140560 NA non-coding upstream 136631 7836476 ~ 7836694 (-)
ncf4 p40phox other upstream 959714 8655106 ~ 8696718 (-)

Expression


Co-expression Network