LOC110493317 (LOC106591490)


Basic Information

Item Value
gene id LOC110493317
gene name LOC106591490
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7714373 ~ 7733873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942569.1
ATGAGGTGGAAAtattgttattttctgtttttattCTCTCTTCATTCAGACctgcaggtgaaggtgactcctgacacagagggacagaagacactgacctgtagcaccacctgtaatctgactgacaaccccacctacatctggtacagGAACGGACAACGTCTAGATGAGCCCACTTCCCTGCAATACTCTGTCAATAATTCTTATTCAGACAgttactcctgtgctgtaaaAAGCCATGAGGATATCCAAGctcctgcagtgtGTGTTGTGGGTGAGAGCTGTATGAATGTGACTTACACCCATCAGAGTATCTGTGCTTTGAAAGGGTCAACAGTGGACATATCCTGTTTTTACACACATCCCAGTTGGCATAACGTCACAGAAGTGTCCTGGTTCAGCAAATGGAAGTCTGGTGTAACTAACGATCTGAGCCAGGACCCAGAGTATGCAGATCGTGTGGAATACCAGCGACAAACAGACAAGGACTCCACTCTAAAAATCACAGACCTGAGGGAAAGAGACTCAACTGAGTACAAGTTCAGATTTAAAACAGTTCATGCAGAATGGGGATATACCTTCTCTGGAAcaactctgtctgtcacagGTCTGCAGGTGGAGATGATTCCTGCCACAGTGACTGAGGGACAGAGAGTGACACTGGACTGTAGGACCGTCTGTACTCTGACTGATAACCCCAACCCCTCCTACATCTGGTACAAGTTAGGCCAGCGCCTCACCGACCTAAATAACAGCCTGATCCTCAACCCAGTCAGCAGTGAGGATGCAGGCAGATACTCCTGTGCTGTAGAAGGCTTTGAGGATCTCCCCTCTCCTGAAGAGACTCTCACTGTCAAATATGGCCCAAAGAACACACTGGCATCAATCCATCTCTCTGATGAAATAGTGGAGggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGATTGGAGCCCACAATCAGTCTTTCTCCTATGggaacacagaactacagcaTGTCTTCAGTCACATCCAGTCATCTGACACCGGGGAGTACTACTGTGAAGCCCGGAATGAGATGGGGACAGACAGGTCTGAGTCTATCAGCATCGATGTGAAATACGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgacatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTACAGAGTTATGCTTGGTACAAGAATGGAAGTGTCTCTCAGAGTATCTTCTATGGGAACACAGAACCACAGCAGGTTTTCAGCCAAATCAAGTCATCTGACACTAGACAGTACTACTGCTGGGTCTCGAATGGAATTAGTACAGACAGGTCTCCATCTTTAGACATTGATGTTAAATATGCCCCCAAAAGCACCTctgtgtcagtcagtccctctggtgaaATAGTGGAGGGCAACTCTGTcactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGACGAATGTGACCTCACCAAAAGCATCAGGACAGAGGTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCTGAGAATATATATGGACGTCTCAACTCTTCCCCTGTATTTGTGGACGTTCAGTATGACCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGAAGCGTTATACCTGGAACAAGAAGAGTGGCCATCAGTCTGTCTCCTATGGGAACACAGAACCACAGCAAGTCTTCAACCAAATCAAGTCATCTGACACTGGAGAGTACTACTGTGAGGCCTGGAATGGGATTAAAACAGGGAGGTCTGAGTCAATCAACATCGATGTGAAATATGGCCCAAAGAACATCTCAGTGTCAACCAGTCTCTCTGGTGAAATAGTGGAGggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCTGAGAATAAATATGGACGACTCAACTCTTCCCCTGTATTTGTGGACGTTCAGTATGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGAAGCGTTATACCTGGTACAAGAAGAGTGGCCATCAGTCTATCTCCTATGGGAACACAGAACCACAGCAAGTCTTCAACCAAATCAAGTCATCTGACACTGGAGAGTACTACTGTGAGGCCTGGAATGGGATGAAGACAGGGAGGTCTGAGTCAATCAACATCGATGTGAAATATGGCCCAAGGAACACttcagtgtcagtcagtccctctggtgacatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTCCAGAGTTACACCTGGTGGTACAATAAGAATGGAGGTGACAATAAGAGTATGACAGGACCACAGCATGTCTTCAACCAAATCCAGTCATCTGACACTGGAGAGTACTACTGTGAGGCCTGGAATGGGATGAAGACAGGGAGGTCTGAGTATATCGACATTGATGTGAAATACGGTCCAAAGAAcacctcagtgtcagtcagtccctctgttGAAATAACGGAGGGCAGTCcagtgactctgacctgcagcagtgatgccaacccacctgTGCAGATTTACATCTGGTACAAGAAGAATGGAGCTGAAACCTCAATTAGACATTCTGGATGGAGTTACAGGATCACTAACATCAGCcctgaggacagaggagaataCTACTGTCTGGCAGTGAATGAAGTTGGATGCAAAAGATCAAAGCTTGTTCCTCTAAATGTTTTGTGTAAACCAAAGACCACCTCcgtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacTTGTGGACAAATACACCTGGTACAAGAAGAATGGAGCTTCACTGAAAGGATCTGAAAACACCTTCCTCATCACCAACATTAACTTGGAGGACAGTGGAGAATACTACTGTGAGGCTGAGAATGAATATGGAGGTCTCAACTCTTCTACAATTTATGTAGATGTTCAGTATGGCCCAAAGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGCAGAATTACACCTGGTACAAGAAGAATGTAACCTCACCAGTATTGTCAGGACAGAATTACAACATCACTAACATCAGCTCTAAGGACAGTGGACATTACTACTGTGAGGCCAGGAATAAAATAGCATCTGAGAACTCTACAGCTCTGAGGATCATTGTAGCAGGGAAACATACCTCAATTAAGACTGCAGCTGTAGGAATCATAATTATTGTTCTGGTTCtcatactctgtctctctggcttcATGTGGTTCAGGAAGAAGGCATCCAACTCCACCTCTGGCACAATAGAAACAAGAGATACAGCAGATGAGGGACAGGGAGACTCTACTCTCCTTTATGACAACGTCTTAGGCATGGCCATGCAGCAGAGACAGCAGTCACCGTCGAGTCAGGATGACGTTCACTACACCAGCGTCCACGTCTCTCCCTCCAAAAACCCGGAAGAGCTTTGTGCTCCATCGTGCAACTGCCTCAACCCCAGAAACAGGACAGAGATGTCCAGTACACTGCTGTGAAATTCAACCTCCCCAGTGCTGCCACTTGactCACGGCGGCACAAGCAGCTGAGGAGGACACCTCTGAGATCTACAGAACagtcaacaaacccagaaccaagaccaccTGAACACAACAAAACCAAGAACACCTGAACACAACAAGCCCCAAACCAAGAAGAACTTAAAACAACAatcccagaaccaagaagacctgaacacaacaaactgtttttaagaaatgtttgcaaaaaactaaacaactgaaatataaatttacagaagtattcagaccttggTTGATGcgccattggcagcgattacagcctcgagtgttcttggttatgatgctacaaggttatacattttttacagcaatacattttgtttcaTATGTCTGTTACGCAAATAAATTCAATTCATTTATATACACTTAATATAAGTTtgctagatttaaaaaaaatatttgtttcatTGTTTTTTATCACAAAGTTATAGCACAATTTTGACTCAAATTTAAGGAAATAGTTATTCTTGATTCAATGTTTCTTATTAATTTTATCATTTTTGTTTTTTACTAATGTGTGAAGTGTAAACAATCTATCATAAACTTCATTGTCATTGTTTTTACCTTATTATGACAGTATTTTCAGTGGAGAGAAAATTAAAAGCTTTTAAAATCACAATcttgtactgtacatacagtaactacaaataatacatttacattaGTTTGTAGAGCAATAGTGGTTTATTCACCTTCATAATCATTATTTCCATacaaaatgtacacacacactttcagaaGAAGCAAAGTCCAGCTCCTAGACACACAACCAGTTACATAAAATATTATGtattgtcatttttttaaatgcagaCACAATATGACTCAATaaaccgagacagacagacagacttgtaTGCATGgcaggtctaaaaaaaaaaataatttggcCAAATACTCAGTCAGCTGAAGACACCTCTTTCACACAAAATGGCCGTTCAGACTTTCGGTATCGCTGAACAATGTCTGCTTTATGTAGCTAACAAGCTTGCTGGGATAGCTAGTTCACTAAATTCAAAAGCCACTCCCACGTCAACTCTTAATAACACAGTATTTTTACATGGATGCTTtactatttatttttaaacattatTTTACCTTCAATTTTGTGTATATTCATTGGTATCTTTATCTACTGCCATATTCTGTTTGAATCTTGTTTGgttaggcaggtagcctagtggtgagagtgttgggccagtaacagaaaggttgctggatcaaatccccaagctgaaaaggtaaaaatctgtcattctgtccctgaacaa

Function

NR:

description
PREDICTED: sialoadhesin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942569.1 True 5226 mRNA 0.44 17 7714373 7733873

Neighbor

gene id symbol gene type direction distance location
LOC118938175 LOC106564328 coding downstream 16007 7672772 ~ 7698366 (-)
LOC118938176 LOC106592614 coding downstream 24467 7682966 ~ 7689906 (-)
LOC110494997 LOC106598058 coding downstream 42514 7625152 ~ 7671859 (-)
LOC118938521 NA coding downstream 60199 7578674 ~ 7699845 (-)
LOC118938178 LOC106601621 coding downstream 146432 7566947 ~ 7567941 (-)
LOC118938522 LOC106591490 coding upstream 172 7734045 ~ 7736476 (-)
LOC118938183 LOC106591333 coding upstream 192060 7925933 ~ 8006473 (-)
LOC110485610 hoga1 coding upstream 325068 8058941 ~ 8080347 (-)
LOC110518530 LOC106591329 coding upstream 364636 8098509 ~ 8119143 (-)
LOC110485578 LOC105012087 coding upstream 446608 8180481 ~ 8201020 (-)
G1140504 NA non-coding downstream 3506 7696547 ~ 7710867 (-)
G1140375 NA non-coding downstream 16403 7648113 ~ 7697970 (-)
G1140457 NA non-coding downstream 32707 7499202 ~ 7681666 (-)
G1140499 NA non-coding downstream 42260 7665917 ~ 7672113 (-)
G1140526 NA non-coding upstream 16921 7750794 ~ 7751003 (-)
G1140531 NA non-coding upstream 23064 7756937 ~ 7761076 (-)
G1140558 NA non-coding upstream 95250 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 99498 7833371 ~ 7833723 (-)
G1140560 NA non-coding upstream 102603 7836476 ~ 7836694 (-)
G1140367 LOC106601621 other downstream 18627 7409260 ~ 7695746 (-)
G1140368 LOC106591490 other downstream 54052 7659697 ~ 7730493 (-)
LOC110493310 LOC106591489 other downstream 209674 7490185 ~ 7534632 (-)
G1140343 NA other downstream 467723 7245712 ~ 7246650 (-)
G1140323 NA other downstream 522130 7190696 ~ 7192243 (-)
G1141490 NA other upstream 597262 8331135 ~ 8332518 (-)
G1141517 NA other upstream 692740 8426613 ~ 8452319 (-)
G1141579 NA other upstream 857092 8590965 ~ 8592898 (-)
ncf4 p40phox other upstream 925686 8655106 ~ 8696718 (-)

Expression


Co-expression Network