Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485616 |
| gene name | LOC106591151 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 7762808 ~ 7888033 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| slit homolog 1 protein-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036940093.1 | False | 6479 | mRNA | 0.52 | 38 | 7762808 | 7888031 |
| TU1299174 | False | 519 | TUCP | 0.52 | 7 | 7763398 | 7829045 |
| TU1299168 | True | 1994 | lncRNA | 0.47 | 3 | 7883873 | 7888033 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938182 | LOC106591493 | coding | upstream | 1732 | 7746401 ~ 7761076 (+) |
| LOC110485502 | kcnip2 | coding | upstream | 482098 | 7237567 ~ 7280710 (+) |
| LOC110517645 | cssa12h10orf76 | coding | upstream | 552776 | 7147638 ~ 7210032 (+) |
| LOC110513552 | LOC106591328 | coding | upstream | 629010 | 7101953 ~ 7133802 (+) |
| LOC118938519 | LOC106591213 | coding | upstream | 679504 | 7080815 ~ 7083304 (+) |
| LOC110485612 | LOC106591159 | coding | downstream | 119783 | 8007814 ~ 8032920 (+) |
| LOC110511650 | LOC106591308 | coding | downstream | 193349 | 8081380 ~ 8096851 (+) |
| LOC110485576 | LOC106591187 | coding | downstream | 277339 | 8165370 ~ 8168323 (+) |
| LOC110487245 | LOC106564368 | coding | downstream | 313010 | 8201041 ~ 8217219 (+) |
| LOC110487246 | LOC106564362 | coding | downstream | 388422 | 8276453 ~ 8318343 (+) |
| G1139652 | NA | non-coding | upstream | 20767 | 7741601 ~ 7742041 (+) |
| G1139644 | LOC106591490 | non-coding | upstream | 37281 | 7723059 ~ 7725527 (+) |
| G1139311 | NA | non-coding | upstream | 64112 | 7650855 ~ 7698696 (+) |
| G1140599 | NA | non-coding | downstream | 22594 | 7910625 ~ 7911039 (+) |
| G1140601 | NA | non-coding | downstream | 24649 | 7912680 ~ 7915538 (+) |
| G1140602 | NA | non-coding | downstream | 31226 | 7919257 ~ 7921396 (+) |
| G1140604 | NA | non-coding | downstream | 33372 | 7921403 ~ 7921659 (+) |
| G1140605 | NA | non-coding | downstream | 33680 | 7921711 ~ 7922019 (+) |
| G1139317 | NA | other | upstream | 235651 | 7525592 ~ 7527157 (+) |
| G1139553 | NA | other | upstream | 260527 | 7475374 ~ 7502281 (+) |
| LOC110485388 | LOC106592846 | other | upstream | 1420920 | 6336889 ~ 6375515 (+) |
| G1140682 | NA | other | downstream | 245969 | 8134000 ~ 8134822 (+) |
| LOC118938189 | LOC106591430 | other | downstream | 682972 | 8570729 ~ 8594285 (+) |
| G1140953 | NA | other | downstream | 753117 | 8641148 ~ 8694875 (+) |
| cbx6a | cbx6 | other | downstream | 903168 | 8790681 ~ 8810954 (+) |
| LOC110487255 | LOC106591397 | other | downstream | 948654 | 8828237 ~ 8840946 (+) |
| G1139713 | NA | non-coding | upstream | 939 | 7882414 ~ 7882934 (+) |
| G1139711 | NA | non-coding | upstream | 4563 | 7879065 ~ 7879310 (+) |
| G1139709 | NA | non-coding | upstream | 9970 | 7871659 ~ 7873903 (+) |
| G1139705 | NA | non-coding | upstream | 22952 | 7860525 ~ 7860921 (+) |
| G1139696 | NA | non-coding | upstream | 43727 | 7839555 ~ 7840146 (+) |
| LOC110485616 | LOC106591151 | other | upstream | 54828 | 7762808 ~ 7888033 (+) |
| G1139690 | NA | non-coding | downstream | 908 | 7829953 ~ 7830197 (+) |
| G1139692 | NA | non-coding | downstream | 5034 | 7834079 ~ 7834780 (+) |
| G1139693 | NA | non-coding | downstream | 6088 | 7835133 ~ 7835335 (+) |
| G1139694 | NA | non-coding | downstream | 9149 | 7838194 ~ 7838413 (+) |
| G1139695 | NA | non-coding | downstream | 10046 | 7839091 ~ 7839350 (+) |
