LOC110518530 (LOC106591329)



Basic Information


Item Value
gene id LOC110518530
gene name LOC106591329
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8098509 ~ 8119143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036940101.1
ACATTGGTACCTTGTAGCGCTTTGAAGGTGAAGCTCAATCGCCTGTCTCACCGCTGCAGCCTACCGGTGAGGTACTGAACAAGAACGagtctctctcctgctctgtacCGGGATCCGTTATAATCATGTCTATATTCGCCGAAGTACCTCAAGCCCCTCCAGTGGCCGTTTTTAAACTGACTGCCGATTTCAGAGAGGACACTCACGCGCAGAAGGTGAATTTGGGAGTCGGAGcctacCGTACAGATGACTGTCTACCGTGGGTCCTGCCCGTAGTGAAGAAGGTAGAGCAGATGATAGTGGAGGACAACAGTCTGAACCACGAGTATCTTCCCATCCTGGGTCTCCCTGAGCTCCGCTCTGCTGCCTCCAAGGTGGCCCTGGGCGATGACAGCCCCGCCATCAAGGACGGGAGGgtGGGAGCTGTCCAGGCGTTGGGAGGTACCGGTGCGTTGAGGATCGGGGCGGAGTTTCTGAGGCGCTGGTACAACGGCACCAACAACACGGCCACGCCCGTCTACGTCTCCGCGCCAACCTGGGAGAACCACAATGCAGTGTTTTCTGATGCTGGGTTTAAAGATATCCGCCCCTACCACTACTGGGACGGAGAAAAGAAAGGCCTGGACGTGACCGGTATAATGGATGAcctggagAACGCTCCAGAACATTCTATCTTTGTGCTCCATGCCTGTGCCCACAACCCCACGGGGACAGACCCCACACCTGACGAATGGAAGACGATCTCTGAGGTCATGAAgagGAGGAAGCTGTTTGTGTTCTTTGACTCAGCCTACCAGGGTTTTGCATCAGGCAGTCTGGATAAAGATGCCTGGGCCATCCGCTACTTTGTCTCTGAAGGATTTGAGCTGCTCTGTGCCCAGTCCTTCTCCAAGAACTTTGGCCTCTACAATGAGCGTGTTGGTAACCTGACGGTAGTGGCCCAGGATAAAGACAACCTGGCCCGTGTTCTGTCCCAGATGGAGAAGATCGTCAGGACCACCTGGTCCAACCCTCCCTCCCAGGGAGCGCGCATCGTAGCCATCACACTCAACAACCCCGATCTGTTCATAGAATGgaaGGGTAATGTAAAGACCATGGCTGACCGTGTATTGTTGATGAGAGACCAGTTGAAGGCTAAGCTCATTGCTCTGGGGACGCCTGGCACCTGGGACCACATCACTCAGCAGATCGGCATGTTCAGCTTCACAGGACTGAACCCTAAGCAGGTGCAGTACATGATTAAGGAGAAGCATGTCTACCTGATGGCCAGCGGTCGTATCAACATGTGTGGCCTCACCTCCAAGAACATCGACTATGTCGCAGAGTCCATCCACGAGACAGTGTCCAAGGTCCAGTAAGGCCCCGCCCTCCGCATCCAGCTGCTTCCTGTCCACCACAGGAAGTACTGTTAATTGTCACGTGTGGTCTCGTCAAGCACCCCCTTCTGTGACAACACACCCTTTCTCTATAAGCAGTGCTCTAACCGTCTATTGGTTGTCAAATTTAGAAGAGCGACGATATGACACGTGTTCACGGCAATCAATGTTAATGATCAACAGTATAACTGGTTTCTGtccatcttctctcctcctcagatTACTGAGACATCTTTAAACAATCTGAACGCAGACCTCTAGTCGAAGTATTTCACTCTTCTGGCGATCGTTCTGttgccttttatttattttattgtgcCATTTCCGGTTTTGAAAATGTAGAAAAGATGACTGTGTGCACTttggttttaaaaaaatgtttcagAGCACTTGAAAGTGAAGCATTGCCAGAAGTTGAGTGAAAAGTTTGTGTAAAATGAATTCTACATACGAGCCCCCAGACCTCCTATCTACAGACGACCACAATGCTTCTGAACGTCTTTTATAATAGAACTGGTTCCATTTAACAATCGCAACATTCTAGAACGTGTGAAATGATGCATTGTGGATCAAATGCTCTGTGATGTCATGTGACAGGCTTGAAAGGTTCTTCACAGTTCATGCATGTGCCTATAGGTCAAACGTTAACAGGAAATGCCCTCTGATAGGGTAATATGACCTTTTCTCAACCTTTGAGCAGCTATATGCAGATATGTCCTATAGGAAAAGCACATACCACTACTGTGGTAATAGTTGAACCACTTAAATGTCTGTGGCTTAGGTTCTGTGTTCGGCATGTACTTGGTGTTAAAAGACTCGTATTCATAATAATGCTGCTTATGAAGGAGTGTTATAACCTCTGCCTTTAACGGTGATGTTTGTTTTGATGTTTTGTTCACTGTACACATAcagttggtcttccaacacacagCCTCACGCCGTTATATTGCCATGGTTATATTGACATCCTGTCTGTACATTTCAGACAGCTAATAAAAAAATGATGAATCGTGTGCTAAA

Function


NR:

description
aspartate aminotransferase, cytoplasmic-like

GO: NA

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036940101.1 True 2396 mRNA 0.49 9 8098509 8119143

Neighbor


gene id symbol gene type direction distance location
LOC110485610 hoga1 coding downstream 18162 8058941 ~ 8080347 (-)
LOC118938183 LOC106591333 coding downstream 92036 7925933 ~ 8006473 (-)
LOC118938522 LOC106591490 coding downstream 362033 7734045 ~ 7736476 (-)
LOC110493317 LOC106591490 coding downstream 364636 7714373 ~ 7733873 (-)
LOC118938175 LOC106564328 coding downstream 400143 7672772 ~ 7698366 (-)
LOC110485578 LOC105012087 coding upstream 61338 8180481 ~ 8201020 (-)
LOC110485582 LOC106591223 coding upstream 106155 8225298 ~ 8262940 (-)
atpv0e2 va0e2 coding upstream 146532 8265675 ~ 8269763 (-)
ncf4 p40phox coding upstream 535963 8655106 ~ 8696718 (-)
LOC110515367 LOC106591437 coding upstream 610080 8729223 ~ 8738426 (-)
G1140782 NA non-coding downstream 30503 8067695 ~ 8068006 (-)
G1140772 NA non-coding downstream 47403 8050860 ~ 8051106 (-)
G1140766 NA non-coding downstream 51641 8035229 ~ 8046868 (-)
G1140765 NA non-coding downstream 55289 8031129 ~ 8043220 (-)
G1140759 NA non-coding downstream 76628 8021554 ~ 8021881 (-)
G1140804 NA non-coding upstream 5869 8125012 ~ 8133738 (-)
G1140807 NA non-coding upstream 13016 8132159 ~ 8160509 (-)
G1140821 NA non-coding upstream 51234 8170377 ~ 8170919 (-)
G1140822 NA non-coding upstream 51860 8171003 ~ 8172268 (-)
G1140367 LOC106601621 other downstream 402763 7409260 ~ 7695746 (-)
G1140368 LOC106591490 other downstream 438188 7659697 ~ 7730493 (-)
LOC110493310 LOC106591489 other downstream 593810 7490185 ~ 7534632 (-)
G1140343 NA other downstream 851859 7245712 ~ 7246650 (-)
G1141490 NA other upstream 211992 8331135 ~ 8332518 (-)
G1141517 NA other upstream 307470 8426613 ~ 8452319 (-)
G1141579 NA other upstream 471822 8590965 ~ 8592898 (-)

Expression



Co-expression Network