LOC118938524 (LOC106590932)


Basic Information

Item Value
gene id LOC118938524
gene name LOC106590932
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8870021 ~ 8872667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942576.1
atgacggcttgtcaCACAATGAAAGGAAGGGCAGACAGCCCTAACCGTTGCTCTCTCAATGGGAGGGGCTTAtcatctggggagcctcaacaacaaaATGATGCTGACAAGaaagagaagagtctctccagatcagaacatcTCAGTAAACACCAGCAGAGACGTATAGGGAAGAAACCTCACCACTGCtgttctgactgtgggaagagttttgccaAACAGACAGAATTGATAATTCACCAGCGGATTCACACTGGGGAGagaccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGACACCTGACTAcacaccaacgcatacacacaggagagaagccttatagctgtgattgGTGTGGGAAGGGCTTCAATCAATCAGGAGCACTGACTAcacaccaacgcatacacacaggagagaagccttatagctgttatcattgtgggaagagcttcaggaTGTCAGGAGATCTGACTGCACACcagcacatacacacagtacagaagccttatagctgtgatcagtgtgggaagaacTTCAATCGTTCAGGACAACTGACTACACACCagcgcatacacacaggagagaggcctTATGGCTGTgttcagtgtgggaagagcttcaatcgTTCAGGACACCTGACTACACACCagcgtatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatcatTCAGGATCCCTAGTTATACACCagcgcatacacacaggagagaagccttatagctgcgatcagtgtgggaagagcttcattCTTTCAGGATCCCTAATTACACACCagcgtatacacacaggagagaggccttatggctgtgatcagtgtgggaaaagcttcaatcATTCAGGACACCTGACTAcacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagctttaaTCATTCAGGAACCCTGAGCGAAcaccaacgcacacacacaggagaaaagccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGACACCTGACTATACACCAACGcttacacacaggagagaagccttacagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAGACCTAACTGCACACCAGCGCATACACACAGGCGAGAagccttacagctgtgatcagtgtgggaagagcttcaatcgTTCAGGAAACCTGACTGCACACCagcgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagtttcaatCATTCAGGAGCCCTGATTACACACCagcgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatcgTTCAGGATACCTGACTATACACCAGCGCATACACACGGGCGAGAAGCCTTATaactgtgatcagtgtgggaagagcttcaggaATTTAGGACACCTGACTATACACCagcgcatacacacaggagagaagccttatagctgtgatcaatgtggaaagagttttgctCGAGATTTCACCCTGACCAAACACCatctcacacacactggagagaaaccttatagctgtgatcagtgtgggaagagtttcaggaCGTCAGAACACCTGACTAaacaccaacgcatacacacaggagagaaaccttatagctgtgatcagtgtgagaAGAGTTTTTCTCAAGATTCCAGCCTGACTACACACCagctcacacacactggagagaaaccttactcctgtctatgtggaaagagctttgctTATTCAGGGTCATTGAAAAAACACCAGAAAGCTCAAACATGTTTTctttcatctccctcctctctggcaCCGATTCCAGATCCCTAAAAGTTGAATAGAAAACATCTTGTGAAGAGTCATCCAACTCCCATTCTCTAACTGTTTAAGTCAGTTATGGTAACGTGTAGATAATGTGGATAATATGCAGCTCTGGATCCATATGTGTCAAGCGTCTCGGAGTAGGAGTGCCGTGTGTGTCTGGTGGGGTGGGGTTGTTCAGAGCTGTATCTTATTTAATTAATTCCTATTATCCATTAAATAACTTTTATGTAGAATAATATTTCAACAATACCAGGTGTGTATTCATGTATTCAAAAGATTAATAATTAAATCCATTATCTGATCTATCTGGGGGAAATGTTGTCTGAAGAGAAATTGTTCATCTTGTCTTATACAATCATTGGTTCCTGTAGATGCTGGGTAGATATGTGAGGGGGGAGATGGTCAAGGACCCTCAGACCTTTTGGCAGAATGACCAGAAGAGGTTGTATAAGTTAAGATAGATGACGCCAGTCACATGCAGGAACCAAATGTTAATGATGAATTCATGATGAATAATGTAAATCATgtaaatataacttgtctgtgtaagcagtatataagagaactaacgggactgccccgAAAGAGCTCCTGACCGATGTGTACTCTGGTGCATTATGTTTGTTGCAATCTCTCCAGCTTGCTGATAAAAAATAATTATTCATTAAAGTT

Function

NR:

description
zinc finger protein 883-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942576.1 True 2562 mRNA 0.45 2 8870021 8872667

Neighbor

gene id symbol gene type direction distance location
LOC110515366 pla2g6 coding downstream 82869 8738735 ~ 8787152 (-)
LOC110515367 LOC106591437 coding downstream 131595 8729223 ~ 8738426 (-)
ncf4 p40phox coding downstream 173303 8655106 ~ 8696718 (-)
atpv0e2 va0e2 coding downstream 600331 8265675 ~ 8269763 (-)
LOC110485582 LOC106591223 coding downstream 607081 8225298 ~ 8262940 (-)
LOC118938192 NA coding upstream 1367 8874034 ~ 8878068 (-)
LOC118938525 LOC106590989 coding upstream 13328 8885995 ~ 8888699 (-)
LOC110495146 LOC106590989 coding upstream 16170 8888837 ~ 8896570 (-)
LOC118938191 NA coding upstream 41411 8914078 ~ 8921063 (-)
LOC118938526 NA coding upstream 55939 8928606 ~ 8929724 (-)
G1141655 NA non-coding downstream 28042 8841329 ~ 8841979 (-)
G1141652 NA non-coding downstream 32514 8836848 ~ 8837507 (-)
G1141646 NA non-coding downstream 46249 8821484 ~ 8823772 (-)
G1141645 NA non-coding downstream 48720 8820930 ~ 8821301 (-)
G1141644 NA non-coding downstream 50634 8819133 ~ 8819387 (-)
G1141717 NA non-coding upstream 131208 9003875 ~ 9054670 (-)
LOC110495076 LOC106564415 non-coding upstream 162887 9035517 ~ 9040840 (-)
G1141791 LOC106564380 non-coding upstream 266225 9138892 ~ 9140210 (-)
G1141636 cbx6 other downstream 72809 8793857 ~ 8797212 (-)
G1141579 NA other downstream 277123 8590965 ~ 8592898 (-)
G1141517 NA other downstream 417702 8426613 ~ 8452319 (-)
LOC110494947 NA other upstream 87640 8960307 ~ 8972481 (-)
G1141790 NA other upstream 342473 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 485412 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 794578 9666379 ~ 9669182 (-)
G1142121 NA other upstream 1107681 9980348 ~ 9982266 (-)

Expression


Co-expression Network