LOC118938192


Basic Information

Item Value
gene id LOC118938192
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8874034 ~ 8878068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035439.1
ATATTGGTTGACACACACCAATAAAGTCAACTGAAGAAGAAAAAGCAGAACAATTTCGTCTTTACAAATATTTTCCTGTATGTGAGATAATTTACTTGTTCTCTGTAATATCGTATAGATTTGGAATCGTGACATTATCTACGGTGGAGGAAAATATGCAGGTTTCTCGACTCATAATACCCTGACTATGAGAAGGGATTGTGAGTGACGATTCGTTTGGCAACCTTGTGACCCAGCATGACACCGTGAACAAGATTGGTCGACCGTCTTGCTGGATCCGAAGCAAGATACATTGTCGCCATGTTTTGTGTTTCGTTAAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACACTTATTTTCTAAGACAAGCGAAGAAATGCATAGTTTCAACAATGGATCCGGACAAAGCTATTCCGTTCCCCTCTACACTCCTGGAGTCCCCAGGTCAAACGTCTCCCGGGACTGCTTTACTGCTGGGTCTGGTTGACTGCAGGAAAACACCGGGGCAGAATGgaactgagagaggaggagaagagaaggaagagggagaTTGGATTTCATTAAGTAAGAACCATGGTGTGTAGATTAGACTACAGTCTGCTTCTGAAACAATAGCGGAGGTGCATAAAGATGGCGGCCTGCATTACTTACCACAAATTAATCATTTTGCTGAGTTCACTGTATTCTACTTTGCTGTCCTTTACTGTTGGTATGGTCATTAGCACAGTAAACATGATCCTAATTTTAGCTTCAAGATGGTGGCAATTTGAAAAACCAAAAAAGTAGATTGTTCAATGTTCCAATCAATCAACACAATGTTGCGCACCATTGTTTCAGAACTCAGTGGATAGTGCTAAAACAATGACGTCATATCAGAATTCTGCCATCTCTATGAACTTTAGTCATTAATTTAATAATTATATATTGATGAAAATATCGGTCATTCCACAGATTTTTAAGTGTACCTTGGTCCAAAAATATttttcacctaattttaacattctgtcatgtaCATCttaatacatgtatttttttccccatttCAAAACATTGAATTAAAATATTACTATACCAAGTGCCtatgtgccaaataaagtaacatgctgaccacactgctcGCGTCACATGCACATAAATGTggttcaatcattgcacccacgcTGCTCGCAGGCGTCAGCGATCGTCAAATAGAAATTGGTTCAATTGGTGACACTCAACTGCCTGCAAGTTCGGCATTTCCCATCTCCTtgttggtttttaggagcatattccacgtgggtgattgaaagatgaatttAGGTCCACACTCCGGTAGGTTGTAGTAATGCTGTAAacttggttgccaaccgccatataaagttcaaagaagaaaaagaagcctcAAGGAAGGATGAGAGAT
>TU1301806
ATAAAGTCAACTGAAGAAGAAAAAGCAGAACAATTTCGTCTTTACAAATATTTTCCTGTATGTGAGATAATTTACTTGTTCTCTGTAATATCGTATAGATTTGGAATCGTGACATTATCTACGGTGGAGGAAAATATGCAGGTTTCTCGACTCATAATACCCTGACTATGAGAAGGGATTGTGAGTGACGATTCGTTTGGCAACCTTGTGACCCAGCATGACACCGTGAACAAGATTGGTCGACCGTCTTGCTGGATCCGAAGCAAGATACATTGTCGCCATGTTTTGTGTTTCGTTAAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACACTTATTTTCTAAGACAAGCGAAGAAATGCATAGTTTCAACAATGGATCCGGACAAAGCTATTCCGTTCCCCTCTACACTCCTGGAGTCCCCAGGTCAAACGTCTCCCGGGACTGCTTTACTGCTGGGTCTGGTTGACTGCAGGAAAACACCGGGGCAGAATGgaactgagagaggag
>TU1301807
TATTATTGTGGCGCAGGAATGTCATATGTGTTTTAAGTTGAACTGGCATTGATGTTTTTGTTTACTACTGGTTTCAGATCCGAAGCAAGATACATTGTCGCCATGTTTTGTGTTTCGTTAAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACACTTATTTTCTAAGACAAGCGAAGAAATGCATAGTTTCAACAATGGATCCGGACAAAGCTATTCCGTTCCCCTCTACACTCCTGGAGTCCCCAGGTCAAACGTCTCCCGGGACTGCTTTACTGCTGGGTCTGGTTGACTGCAGGAAAACACCGGGGCAGAATGgaactgagagaggag

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035439.1 False 1452 mRNA 0.40 3 8874034 8878068
TU1301806 False 561 lncRNA 0.44 3 8874905 8878048
TU1301807 True 383 lncRNA 0.45 2 8874905 8877394

Neighbor

gene id symbol gene type direction distance location
LOC118938524 LOC106590932 coding downstream 1367 8870021 ~ 8872667 (-)
LOC110515366 pla2g6 coding downstream 86882 8738735 ~ 8787152 (-)
LOC110515367 LOC106591437 coding downstream 135608 8729223 ~ 8738426 (-)
ncf4 p40phox coding downstream 177316 8655106 ~ 8696718 (-)
atpv0e2 va0e2 coding downstream 604344 8265675 ~ 8269763 (-)
LOC118938525 LOC106590989 coding upstream 7927 8885995 ~ 8888699 (-)
LOC110495146 LOC106590989 coding upstream 10769 8888837 ~ 8896570 (-)
LOC118938191 NA coding upstream 36010 8914078 ~ 8921063 (-)
LOC118938526 NA coding upstream 50538 8928606 ~ 8929724 (-)
LOC118938527 LOC106594753 coding upstream 54866 8932934 ~ 8938645 (-)
G1141655 NA non-coding downstream 32055 8841329 ~ 8841979 (-)
G1141652 NA non-coding downstream 36527 8836848 ~ 8837507 (-)
G1141646 NA non-coding downstream 50262 8821484 ~ 8823772 (-)
G1141645 NA non-coding downstream 52733 8820930 ~ 8821301 (-)
G1141644 NA non-coding downstream 54647 8819133 ~ 8819387 (-)
G1141717 NA non-coding upstream 125807 9003875 ~ 9054670 (-)
LOC110495076 LOC106564415 non-coding upstream 157486 9035517 ~ 9040840 (-)
G1141791 LOC106564380 non-coding upstream 260824 9138892 ~ 9140210 (-)
G1141792 LOC106564390 non-coding upstream 263199 9141267 ~ 9175400 (-)
G1141636 cbx6 other downstream 76822 8793857 ~ 8797212 (-)
G1141579 NA other downstream 281136 8590965 ~ 8592898 (-)
G1141517 NA other downstream 421715 8426613 ~ 8452319 (-)
LOC110494947 NA other upstream 82239 8960307 ~ 8972481 (-)
G1141790 NA other upstream 337072 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 480011 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 789177 9666379 ~ 9669182 (-)
G1142121 NA other upstream 1102280 9980348 ~ 9982266 (-)

Expression


Co-expression Network