LOC118938527 (LOC106594753)


Basic Information

Item Value
gene id LOC118938527
gene name LOC106594753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8932934 ~ 8938645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942579.1
ATGACGTCTCACAAATCATCATCGCCATGGACACATCTGTTTACGGACTCATATTTGCAAAACCTAACTATTCAATGCCTTTGTTTCACAGGGGACATCCCTAATCGTTGCTCTCTTAGAGGGAGGGGCTtatctggggagcctcaacaacatcatgatgctgacaagaaagagaagagtctctccagatcagaacacctcaagaaGCACCAGCATAGAGGTACAGGGAAGAAACCTCaacactgctgctctgactgtgggaagagtttggCTAAACAGGACTTGACAAATCATGAGCAAATTCACACTCTAGAGCATGCATCTAATACCTTAAAATCTCACCAGAGAATTAATTCAGGGGAGGGACCTTATACCTGCTTGGATTGTGGGAAATACTTAAACCAGTCAGGAGCCCAgactaaacacaaacacaaacacacaggagagaagccttatagctgtgttcagtgtgggaagagcttcagtcGATCAGGAGACCTGACTACACACCAACTCATACACACAGGAgcgaagccttatagctgtgatcaatgtgggaagaactTCAATCAATCAGGACACCTGACTGcacaccaacgcatacacacaggagagaagccatataGCTGTgttcagtgtgggaagagcttcagtcGATCAGGAGACCTGACTACACACCAACTCATACACACAGGAgcgaagccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAACCCTGACTGcacaccaacgcatacacacaggagagaagccttatagctgcgatcaatgtgggaagaactTCAATCAATCAGGACACCTGACTGcacaccaacgcatacacacaggagcgaagccttatagctgtgatcattgTGGAAAGAGCTTCAGTCGATCAGGAGACCTGACTCtacaccaacgcatacacacaggagagaagccttatagctgtgatcaatgtgggaagaactTCAATCAATCAGGACACCTGACTGcacaccaacgcatacacacaggagcgaagccttatagctgtgatcattgTGGAAAGAGCTTCAGTCGATCAGGAGACCTGATCAAACACCAACGCatgcacacaggagagaagcattatagctgtgatcagtgtgggaagagcttcagtcGATCAGAATCCCTGACTAGACACCAACTCATACACACAGGAgcgaagccttatagctgtgatcattgTGGAAAGCGCTTCAGTCGATCAGGAGACCTGACTCTAcaccaacgcatacacacaggagagaagccttatagctgtgatcattgTGGAAAGAGCTTCAGTCGATCAGGAGACCTGATCAAACACCAACGCatgcacacaggagagaagcattatagctgtgatcagtgtgggaagagcttcagtcGATCAGAATCTCTGACTAGACACCAACTCATACACACAGGAGCGAAGCCTTATAGCTATGATCATTGTGGAAAGAGCTTCAGTCGATCAGGAGACCTGACTCtacaccaacgcatacacacaggagtgaagccttatagctgtgatcaatgtgggaagaactTCAATCAATCAGGACTCCTGACTAtacaccaacgcatacacacaggagagaagccttatagctgtgttcagtgtgggaagagcttcagtcGATCAGGAGACTTGACTACACACCAACTCATACACACAGGAgcgaagccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAACCCTGACTGcacaccaacgcatacacacaggagagaagccttatagctgtgatcaatgtgggaagaactTCAATCAATCAGGACACCTGACTGcacaccaacgcatacacacaggagagaagccatataGCTGTgttcagtgtgggaagagcttcagtcgatcaggagacctgactatacaccaatgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagctttgctcGTTCAGGGTCACTGATAAAACACCAGAAAGCACAAACATGTCGTCTTTCATCTCCCTTCTCTCTGGCACCGGTTCCAGATCCCTAAATAAAGTTTACATAGAAAACATCTTGTAAACAGTCATCCATCTCCCATTCTCTAACACTTTAGTAAGTCTGATTGCCATGGTAACATGTGTAGCATAATATGCAGCTCTGGATCCGTATGTTACAAGCGTCTTGGAGTAGAAGTGctgtgtgtggtggggtgggggaggaggtgtTCAGAGCTATCTTTTAATTTATGATCTCATATTATCCATTAAATAATGTATAATAAAATGTTTCACCAATGGTAGGTGTATATTCATGTGTGGGGGAAATGTTATCTGAAGAGAGAGCCTTGAATTGTACTTGTCTCATACAATCATTGGTTCCTGTAGGTAGAGTTATGAGGGGAGACGGTCATGACCCCCTCAGACCTTTTGGCAGAACGCTCAGAATATGTTCTATAAGTTACATGCAGGAACCATATGTTAATGATGAATAatgtaaatcatgcaaatataacttgtctgtgtaagcAGTATATAAGAGGACTAACGG

Function

NR:

description
PREDICTED: zinc finger protein 271-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942579.1 True 2582 mRNA 0.45 3 8932934 8938645

Neighbor

gene id symbol gene type direction distance location
LOC118938526 NA coding downstream 3210 8928606 ~ 8929724 (-)
LOC118938191 NA coding downstream 11871 8914078 ~ 8921063 (-)
LOC110495146 LOC106590989 coding downstream 36364 8888837 ~ 8896570 (-)
LOC118938525 LOC106590989 coding downstream 44235 8885995 ~ 8888699 (-)
LOC118938192 NA coding downstream 54866 8874034 ~ 8878068 (-)
LOC118938196 LOC106589327 coding upstream 6635 8945280 ~ 8948376 (-)
LOC118938195 LOC106589327 coding upstream 10987 8949632 ~ 8952728 (-)
LOC110494947 NA coding upstream 25310 8960307 ~ 8972481 (-)
LOC110494900 LOC106599267 coding upstream 37955 8976600 ~ 8981775 (-)
LOC110495076 LOC106564415 coding upstream 96872 9035517 ~ 9040840 (-)
G1141654 LOC106591397 non-coding downstream 47070 8838678 ~ 8885864 (-)
G1141655 NA non-coding downstream 90955 8841329 ~ 8841979 (-)
G1141652 NA non-coding downstream 95427 8836848 ~ 8837507 (-)
G1141717 NA non-coding upstream 65230 9003875 ~ 9054670 (-)
G1141791 LOC106564380 non-coding upstream 200247 9138892 ~ 9140210 (-)
G1141792 LOC106564390 non-coding upstream 202622 9141267 ~ 9175400 (-)
G1141799 LOC106564380 non-coding upstream 227887 9166532 ~ 9169332 (-)
G1141636 cbx6 other downstream 135722 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 201151 8729223 ~ 8738426 (-)
ncf4 p40phox other downstream 265838 8655106 ~ 8696718 (-)
G1141579 NA other downstream 340036 8590965 ~ 8592898 (-)
G1141517 NA other downstream 480615 8426613 ~ 8452319 (-)
G1141790 NA other upstream 276495 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 419434 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 728600 9666379 ~ 9669182 (-)
G1142121 NA other upstream 1041703 9980348 ~ 9982266 (-)

Expression

LOC118938527(LOC106594753) Expression in all Baseline Samples

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LOC118938527(LOC106594753) Expression in each Bioproject

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LOC118938527(LOC106594753) Expression in each Sample
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Co-expression Network