LOC110494947


Basic Information

Item Value
gene id LOC110494947
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8960307 ~ 8972481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469350.2
GAAGCACATATGTCCCTGTTTTATGACAAAACGGTTGATCTGAATCAAACACTAACGTTAGTTAGCCATCCTCGGCGACAATGTTATTGTGGCGCAGGAATGTCATATTTGTGTTTTAACTTTATGTTAACTGTCATTGAAGTTGATGCTTACTATTAGGTTTCAGATTCGAAGTAAGATCAATTGCCCGTTATGTTTTGTGTTTCGTTAAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACTCTTATTTTCTAAGACAAGCGAAGAAACGCGTAGTTTCCACAATGGATCCGGCAAATATACTTGTATGGGAGTCCAGACGGCAGCATTAACATTGGCCTTGTATTTGCATCCATTCCTTGCAGTCATTACTAGAGACAACCGGCAGAATTGTGTCCAGAGCCTTGTCTCCCACCTACACCTTACAAGAACACAATGCAGAACGGTACCGGTGCCGAGCcggttacattggtgccgtgatcCAGATCAACGTGGATCATTATGAATCGTCGTTGATCAACACCAGCTTGGTCACCGGGAGTTGCTATGCTATAAATAGGTTGGAAGTGAAATCTCTTAAACACACCAAAAAATAGCTAATGGTTTGTTTGGTATATCTCTTAGATTAACTGATACATTTGAAATTGTTGTTACATATATTCCATTTTATTTGTGTATTTTGATAGTGAATATGACTTCAAGTTGAAGTCCGacgtttacgtacacttaggttggagtcattaaaactcgtctttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtctgttaggacatctactttgtgcatgacaagtcattttt
>XR_005035445.1
AGTGTGACTACTCAGAGTATCTTTACCGTGAAGGGGTCAACAGTGGATCTATCCTGCACTTACACATATCCCAGAGGTCATACAGTCATAAAAGCATCATGGTCCTATAGATGGTCTGGTGTGAAACCTGAGAATGGTGCTATTTCATTTCAAGATGCTCTATATAATAACATGTATTCATATCCTCCACCTTGTTGTTGAACCTTTAGGGAAACAGACCTCAGTTATGTGAAGTGTAGAAGTGTTCAGCTGTAGGAATCACAGATTCTCATACTCCATCTCTCTGGATTCATGTGATTCAGGTGAGAATCTAAGACTTTCACTTCACGTTATCATTTTGATTTAATAACTTGATTCTTTATTCATTCACGTATAAAACAGAAAGAAGGCCTCCAAATCCAACTCTGACATAAGAGACACAGCAGACGGCCGACAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACTCTTATTTTCTAAGACAAGCGAAGAAACGCGTAGTTTCCACAATGGATCCGGCAAATATACTTGTATGGGAGTCCAGACGGCAGCATTAACATTGGCCTTGTATTTGCATCCATTCCTTGCAGTCATTACTAGAGACAACCGGCAGAATTGTGTCCAGAGCCTTGTCTCCCACCTACACCTTACAAGAACACAATGCAGAACGGTACCGGTGCCGAGCcggttacattggtgccgtgatcCAGATCAACGTGGATCATTATGAATCGTCGTTGATCAACACCAGCTTGGTCACCGGGAGTTGCTATGCTATAAATAGGTTGGAAGTGAAATCTCTTAAACACACCAAAAAATAGCTAATGGTTTGTTTGGTATATCTCTTAGATTAACTGATACATTTGAAATTGTTGTTACATATATTCCATTTTATTTGTGTATTTTGATAGTGAATATGACTTCAAGTTGAAGTCCGacgtttacgtacacttaggttggagtcattaaaactcgtctttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtctgttaggacatctactttgtgcatgacaagtcattttt
>TU1301821
AGCGTGATGAGGAGAGGCAAATATACTTACTTGTATGGGAGTCCAGACGGCAGCATTAACGTTTGCCTTGTATTTGTATCCATTCCATGCAGTCATTACTAGAGACAACCGGCAGAATTGTGTCCAGAGCCTTGTCTCCCACCTACACCTTACAAGAACACAATGCAGAACGGTACCGGTACAGAACCGGTTACAACTAGTTTTCATAGTCTTTGATCCACCACATCCCTGTGGACTGTTAATGGCTGGACAAAGAAAACATGACGGTAAAACTGGTTGGGATTTTTCTTCCAACCGCAAAGTAACTCACTACTTTATTAAGTGTAGGAATCTGTGTCTCTTACTTAATTATCTCTCATTCCTCGTAAAGTGTGTACTTATTCACCTCCACTGATTTGAAAGTCAGATTATCCATCACATGACCAGACACTAACGATGAAAATACGTCTTCTGTGGGGTTTATCAGCGGTAGGCAAACCAACATTATGGTGCATTAAGCCATCTCCTGTGCTGGAGTGTGGGCCAGCGACAGGGATTGAGGAACTAAATCCTATCTGCCCTGTTTCtcttaaaaaataacaatatttgtgACTGTTTCTAACAATGTTCTACTCAGTATGCTGATCAAACTCAATTCCTGTACCCCTTTCTCCCTCATACTGGATCAGTCTCTGTTTCCCTATCATACTGCCTATACTGTATCTAATGATGTTCTACTCAGTATGCTGATCAAACTCAATTCCTGTACCCCTTTCTCCCTCATACTGGATCAGTCTCTGTTTCCCTATCATACTGCCCACACTGTATCTAATGATGTTCTACTCAGTATGCTGATCAAACTCAATTCCTGTACCCCTTTCTCCCTCATACTagatcagtct
>TU1301818
TTTTATGACAAAACGGTTGATCTGAATCAAACACTAACGTTAGTTAGCCATCCTCGGCGACAATGTTATTGTGGCGCAGGAATGTCATATTTGTGTTTTAACTTTATGTTAACTGTCATTGAAGTTGATGCTTACTATTAGGTTTCAGATTCGAAGTAAGATCAATTGCCCGTTATGTTTTGTGTTTCGTTAAGGACTCAGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACTCTTATTTTCTAAGACAAGCGAAGAAACGCGTAGTTTCCACAATGGATCCGGCAAATATACTTGTATGGGAGTCCAGACGGCAGCATTAACATTGGCCTTGTATTTGCATCCATTCCTTGCAGTCATTACTAGAGACAACCGGCAGAATTGTGTCCAGAGCCTTGTCTCCCACCTACACCTTACAAGAACACAATGCAGAACGGTACCGGTGCCGAGCcggttacattggtgccgtgatcCAGATCAACGTGGATCATTATGAATCGTCGTTGATCAACACCAGCTTGGTCACCGGGAGTTGCTATGCTATAAATAGGTTGGAAGTGAAATCTCTTAAACACACCAAAAAATAGCTAATGGTTTGTTTGGTATATCTCTTAGATTAACTGATACATTTGAAATTGTTGTTACATATATTCCATTTTATTTGTGTATTTTGATAGTGAATATGACTTCAAGTTGAAGTCCGacgtttacgtacacttaggttggagtcattaaaactcgtctttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtctgttaggacatctactttgtgcatgacaagtcatttttccaacaattgtatagacatattatttcactgtgtcacaattccagtgggtcagaagtttatgtaCACTAAGtttactgcctttaaacagcttggaaagttccagaaaatgatgtcatggctttagaagattctgttaggctaattgacatcatttgagtcaattggaggtgtacatgtggatgtatttcaaggcctaccttcaaactcagtgcctctttccttgacattatggggaaatcaaaagaaatcagccaagacctcagaaaaagaattgtagacctccaccagtctggttcatcattgggagcgaTTTCCGAATGccttaaggtaccacgttcatctgtacaaacaatagtattcaagtataaacaccatgggactacacagccgtcataccgctcaggaaggagactcgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggccgctcagcaaagaagaagccactgctccaaaaccgccattaaaaaacgggttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctaatgaaacaaaaacaactgtttggccataatgaccatcattatgtttgggggaaaaggggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacaaggctggcagcatcatgttgtggggctgctttgctgcaggagggactggtgcacttctcaaaatagatggcatcatgatgaggaaacttatgtgtatatattgaagcaacatctcaagacatcagtcaggatgttaaagcttggttttcaaatgggtcttccaaatggacaatgaccccaagtatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgggagtggccatcacaaagccttgacctcaatcctatagaaaatgtgtgggcagaactgaaaaagcatgtgtgagtaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggattgggccaaaattcatccaacttattgtgggaagcttgtggaaggctacccaaaatgtttggcccaagttaaacaatttaaaggcaattctaccaaatactaattgagtgtacgtgaacttctgacacactggaaatgtgatgaaagaaaaaagctgaaataaataattctctaccattattctgacatttcacattcttaaaataaagtggtgatcctaactgaccaaagacagggatttttgtactaggattaaatgtcaggaaatgtgaaacttgagtttaaatgtattttgctaaggtgtatgtaaacttccgacttcaactgtatattgttgAAAAAGGAGACCGTGTTTTCAGTGATGAGCTTCAACTGGGTCTTGGgagagggatgtttttcaggtAGTTGCCTCAGACCCCAGCTAGAACTATAGCTAGAACTATGTCGATTCACCACATTTTTGCTCTACTCGGGTGCCTAACGACACACCCTCGGCTCCTTTCATTATGCTTAGTGACACTCAGATAGTTCAGAGGTGGCCAGCCCTGACTTGGGAAATCTTACCACACAACTCGCCCATCAGATAGGACAGTCTATATCAGCTCAAATTAGGAAGGAAGGTGAGAGGAAGGAGGATAGAGGCACACATTCACAGAGCTCCAGTGCAGGACAGACATTCACTGACACACCCTCCCTTCATGTATCTGGTATGAAGTTCGTGCAGTCTGACGTGAGAGAGACTCCATGTTTCAGAGGGGAGGGGTCTGACAAGTACTCAGTACATGAATGGGAGGAGCTTATGGACGCTTACCTGAGAAAGAGGGGCGTGCCGGTCATAGAACAGTCACAGGAGATCATGACCAAGCTTCTGCGGAGAGGTAGAGACATCGTAAAGATAAAACTCCGCAGCAATACATCTCTGAAACCTCACGAGAACCCCCAAAGTGATAGATATACTGAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469350.2 False 894 mRNA 0.40 3 8963955 8965726
XR_005035445.1 False 1118 mRNA 0.40 4 8963955 8972481
TU1301821 False 881 TUCP 0.42 2 8960307 8964522
TU1301818 True 2978 TUCP 0.42 3 8961853 8965708

Neighbor

gene id symbol gene type direction distance location
LOC118938195 LOC106589327 coding downstream 11227 8949632 ~ 8952728 (-)
LOC118938196 LOC106589327 coding downstream 15579 8945280 ~ 8948376 (-)
LOC118938527 LOC106594753 coding downstream 25310 8932934 ~ 8938645 (-)
LOC118938526 NA coding downstream 34231 8928606 ~ 8929724 (-)
LOC118938191 NA coding downstream 42892 8914078 ~ 8921063 (-)
LOC110494900 LOC106599267 coding upstream 4119 8976600 ~ 8981775 (-)
LOC110495076 LOC106564415 coding upstream 63036 9035517 ~ 9040840 (-)
LOC110495075 LOC106599573 coding upstream 77269 9049750 ~ 9057694 (-)
LOC110509201 LOC106564418 coding upstream 92849 9065330 ~ 9074824 (-)
LOC110508389 LOC106564395 coding upstream 106734 9079215 ~ 9083746 (-)
G1141654 LOC106591397 non-coding downstream 78091 8838678 ~ 8885864 (-)
LOC118938192 NA non-coding downstream 85907 8874034 ~ 8878068 (-)
G1141655 NA non-coding downstream 121976 8841329 ~ 8841979 (-)
G1141652 NA non-coding downstream 126448 8836848 ~ 8837507 (-)
G1141717 NA non-coding upstream 31394 9003875 ~ 9054670 (-)
G1141791 LOC106564380 non-coding upstream 166411 9138892 ~ 9140210 (-)
G1141792 LOC106564390 non-coding upstream 168786 9141267 ~ 9175400 (-)
G1141799 LOC106564380 non-coding upstream 194051 9166532 ~ 9169332 (-)
G1141636 cbx6 other downstream 166743 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 232172 8729223 ~ 8738426 (-)
ncf4 p40phox other downstream 296859 8655106 ~ 8696718 (-)
G1141579 NA other downstream 371057 8590965 ~ 8592898 (-)
G1141517 NA other downstream 511636 8426613 ~ 8452319 (-)
G1141790 NA other upstream 242659 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 385598 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 694764 9666379 ~ 9669182 (-)
G1142121 NA other upstream 1007867 9980348 ~ 9982266 (-)
lgals2b LOC106590712 other upstream 1125441 10097922 ~ 10102555 (-)

Expression


Co-expression Network