LOC110494900 (LOC106599267)


Basic Information

Item Value
gene id LOC110494900
gene name LOC106599267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8976600 ~ 8981775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570228.2
TTTAACATTATATTCCCGCTGTGTTGTATAAAATGTCTAGGCCTAGTTTTCATCATATTTGAACCTCTACATTGCTGTGTTCTGTTTGgagcggcaggtagactagtggttagagcgttgggtcagtaaccgaatcACCGAGCTGACCAGATAAAACATATGTCGTTCtgttcctgaacaaggcaggtgaCCCACTGTTGATGgAGTCCCCAGGTCAACCGCCTCTCCGTACTTTACTGCTGGTTCTGGTCGACTGCAGGAAAACACCGGGGCAGAGTGGAactgagagaggagaagaggaacatGGAGATGTGATTTCATTAAGGGACATCCCTAATCGTTGCTCTCTTAGAGGGAGGGGCTTAtcatctggggagcctcaacaacatcatgatACTGACAAGAAAAAGAATAGTCTCTTCAGATCGAAACACCGGCATAGAGGTATAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagttttgctaaACAAGACTTGACTATTCATGAGCAAATtcacaccggagagaaaccgTTCCACTGCTCTCGGTGCGGGAAGAGTTTCACTGCATCTAAAACTTTAAAATCTCATCAGAGAATTCATACAGGGGAGAGGCCTTCCCCCTACTTTGATTGTGAGAAATGCTTCAAACAATCAGGATCCCAGactacacaaaaacacacaggacagccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGAGGCCTGACTAgacaccaacgcatacacacaggagagaagcctcatagctgtgatcagtgtgggaagagcttcaatcatTCAGGTACCCTGAGCGAACAccaacgtatacacacaggagagatgccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatgaATCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagcttcAGTCGATCAGGAGACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTTATTCAATCAGGACACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTCATTCAATCAGGACACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagttttgctCTAGATTTCACCCTGACTACACACCAgcgaatacacactggagagaaaccttattcCTGTCTatgtggaaagagctttgctcATTCAGGGTCACTGAAAAAACACCAGGATGCACaaatatgttgtttttttatctccctcctctccgGCACCAGTTTCAGATCTCTAAATGAAGTTTCAATAGAAAACATATTGTAAAGAGTCATCCATCTCCCATTCGCTAACAGTTTACTAAGTCTGATTACCAAGGTAACCTGTGTAGCATGATATGCAGCTCTGGATCCATATGTATCAAGCGTCTTGGAGTTCGGTATCTTATTTCATTAACTCCTGTTGTCCATTAAATAATGTAGAATAATGTTTCAACAATTGTAGGTTCATATTAATGTGTGAGGGAAATGTTGTTGTCTGAAGAAAGAGCCTTGAATTGTACATCTTGTCTCATACAATTATTGGTTCCTGTTGATGCTGGGTAGAAATGTGAGGGGGAGACGGTCATGACCCCTCAGACCTTTTGGCAGAATATGTTCAATAAGTTAAGATAGGAGACGGTGCCAGTCACATGCAGGAACCAAACGTCAATGATGAATAAATTTATGATTAatgtaaatcatgcaaatataacttgtctgtgtaaacAGTATATAAGAGAACTAACGGGACTGTCCCGAAAGAGCTCCAGACCGTACTCTGGTGTTTTAAGTTTGCTGAAACCTCTCCAGCTTCCTGATAATAAATCATTATTCATTTAAGTTTTA
>XM_036940165.1
TTAAAGAAGAACAAGATTAGAGCAAAGCAGCTTTAACTGTACTGTTGTAGCTGAAAACATTTCATATCATACAAAGGAACAGTAGCTTCCACAATGGATCGGCAAAAGACTAGCCtgtccccctccaccctccaggAGTCCCCAGGTCAACCGCCTCTCCGTACTTTACTGCTGGTTCTGGTCGACTGCAGGAAAACACCGGGGCAGAGTGGAactgagagaggagaagaggaacatGGAGATGTGATTTCATTAAGGGACATCCCTAATCGTTGCTCTCTTAGAGGGAGGGGCTTAtcatctggggagcctcaacaacatcatgatACTGACAAGAAAAAGAATAGTCTCTTCAGATCGAAACACCGGCATAGAGGTATAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagttttgctaaACAAGACTTGACTATTCATGAGCAAATtcacaccggagagaaaccgTTCCACTGCTCTCGGTGCGGGAAGAGTTTCACTGCATCTAAAACTTTAAAATCTCATCAGAGAATTCATACAGGGGAGAGGCCTTCCCCCTACTTTGATTGTGAGAAATGCTTCAAACAATCAGGATCCCAGactacacaaaaacacacaggacagccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGAGGCCTGACTAgacaccaacgcatacacacaggagagaagcctcatagctgtgatcagtgtgggaagagcttcaatcatTCAGGTACCCTGAGCGAACAccaacgtatacacacaggagagatgccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatgaATCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagcttcAGTCGATCAGGAGACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTTATTCAATCAGGACACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTCATTCAATCAGGACACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagttttgctCTAGATTTCACCCTGACTACACACCAgcgaatacacactggagagaaaccttattcCTGTCTatgtggaaagagctttgctcATTCAGGGTCACTGAAAAAACACCAGGATGCACaaatatgttgtttttttatctccctcctctccgGCACCAGTTTCAGATCTCTAAATGAAGTTTCAATAGAAAACATATTGTAAAGAGTCATCCATCTCCCATTCGCTAACAGTTTACTAAGTCTGATTACCAAGGTAACCTGTGTAGCATGATATGCAGCTCTGGATCCATATGTATCAAGCGTCTTGGAGTTCGGTATCTTATTTCATTAACTCCTGTTGTCCATTAAATAATGTAGAATAATGTTTCAACAATTGTAGGTTCATATTAATGTGTGAGGGAAATGTTGTTGTCTGAAGAAAGAGCCTTGAATTGTACATCTTGTCTCATACAATTATTGGTTCCTGTTGATGCTGGGTAGAAATGTGAGGGGGAGACGGTCATGACCCCTCAGACCTTTTGGCAGAATATGTTCAATAAGTTAAGATAGGAGACGGTGCCAGTCACATGCAGGAACCAAACGTCAATGATGAATAAATTTATGATTAatgtaaatcatgcaaatataacttgtctgtgtaaacAGTATATAAGAGAACTAACGGGACTGTCCCGAAAGAGCTCCAGACCGTACTCTGGTGTTTTAAGTTTGCTGAAACCTCTCCAGCTTCCTGATAATAAATCATTATTCATTTAAGTTTTA
>XM_036940166.1
TTAAAGAAGAACAAGATTAGAGCAAAGCAGCTTTAACTGTACTGTTGTAGCTGAAAACATTTCATATCATACAAAGGAACAGTAGCTTCCACAATGGATCGGCAAAAGACTAGCCtgtccccctccaccctccaggAGTCCCCAGGTCAACCGCCTCTCCGTACTTTACTGCTGGTTCTGGTCGACTGCAGGAAAACACCGGGGCAGAGTGGAactgagagaggagaagaggaacatGGAGATGTGATTTCATTAAGGGACATCCCTAATCGTTGCTCTCTTAGAGGGAGGGGCTTAtcatctggggagcctcaacaacatcatgatACTGACAAGAAAAAGAATAGTCTCTTCAGATCGAAACACCGGCATAGAGGTATAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagttttgctaaACAAGACTTGACTATTCATGAGCAAATtcacaccggagagaaaccgTTCCACTGCTCTCGGTGCGGGAAGAGTTTCACTGCATCTAAAACTTTAAAATCTCATCAGAGAATTCATACAGGGGAGAGGCCTTCCCCCTACTTTGATTGTGAGAAATGCTTCAAACAATCAGGATCCCAGactacacaaaaacacacaggacagccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGAGGCCTGACTAgacaccaacgcatacacacaggagagaagcctcatagctgtgatcagtgtgggaagagcttcaatcatTCAGGTACCCTGAGCGAACAccaacgtatacacacaggagagatgccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatgaATCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagcttcAGTCGATCAGGAGACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTTATTCAATCAGGACACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTCATTCAATCAGGACACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagttttgctCTAGATTTCACCCTGACTACACACCAgcgaatacacactggagagaaaccttattcCTGTCTatgtggaaagagctttgctcATTCAGGGTCACTGAAAAAACACCAGGATGCACaaatatgttgtttttttatctccctcctctccgGCACCAGTTTCAGATCTCTAAATGAAGTTTCAATAGAAAACATATTGTAAAGAGTCATCCATCTCCCATTCGCTAACAGTTTACTAAGTCTGATTACCAAGGTAACCTGTGTAGCATGATATGCAGCTCTGGATCCATATGTATCAAGCGTCTTGGAGTTCGGTATCTTATTTCATTAACTCCTGTTGTCCATTAAATAATGTAGAATAATGTTTCAACAATTGTAGGTTCATATTAATGTGTGAGGGAAATGTTGTTGTCTGAAGAAAGAGCCTTGAATTGTACATCTTGTCTCATACAATTATTGGTTCCTGTTGATGCTGGGTAGAAATGTGAGGGGGAGACGGTCATGACCCCTCAGACCTTTTGGCAGAATATGTTCAATAAGTTAAGATAGGAGACGGTGCCAGTCACATGCAGGAACCAAACGTCAATGATGAATAAATTTATGATTAatgtaaatcatgcaaatataacttgtctgtgtaaacAGTATATAAGAGAACTAACGGGACTGTCCCGAAAGAGCTCCAGACCGTACTCTGGTGTTTTAAGTTTGCTGAAACCTCTCCAGCTTCCTGATAATAAATCATTATTCATTTAAGTTTTA
>XM_021570227.2
GTGTAGTCTGCCATAAAACCTTAAAGAAGAACAAGATTAGAGCAAAGCAGCTTTAACTGTACTGTTGTAGCTGAAAACATTTCATATCATACAAAGGAACAGTAGCTTCCACAATGGATCGGgAGTCCCCAGGTCAACCGCCTCTCCGTACTTTACTGCTGGTTCTGGTCGACTGCAGGAAAACACCGGGGCAGAGTGGAactgagagaggagaagaggaacatGGAGATGTGATTTCATTAAGGGACATCCCTAATCGTTGCTCTCTTAGAGGGAGGGGCTTAtcatctggggagcctcaacaacatcatgatACTGACAAGAAAAAGAATAGTCTCTTCAGATCGAAACACCGGCATAGAGGTATAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagttttgctaaACAAGACTTGACTATTCATGAGCAAATtcacaccggagagaaaccgTTCCACTGCTCTCGGTGCGGGAAGAGTTTCACTGCATCTAAAACTTTAAAATCTCATCAGAGAATTCATACAGGGGAGAGGCCTTCCCCCTACTTTGATTGTGAGAAATGCTTCAAACAATCAGGATCCCAGactacacaaaaacacacaggacagccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGAGGCCTGACTAgacaccaacgcatacacacaggagagaagcctcatagctgtgatcagtgtgggaagagcttcaatcatTCAGGTACCCTGAGCGAACAccaacgtatacacacaggagagatgccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtaatcagtgtgggaagagcttcaatcagTCAGTAGAGCTGACTAgacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatgaATCAGGAAACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagcttcAGTCGATCAGGAGACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTTATTCAATCAGGACACCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaaGCTTCATTCAATCAGGACACCTGACTAaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtggaaagagttttgctCTAGATTTCACCCTGACTACACACCAgcgaatacacactggagagaaaccttattcCTGTCTatgtggaaagagctttgctcATTCAGGGTCACTGAAAAAACACCAGGATGCACaaatatgttgtttttttatctccctcctctccgGCACCAGTTTCAGATCTCTAAATGAAGTTTCAATAGAAAACATATTGTAAAGAGTCATCCATCTCCCATTCGCTAACAGTTTACTAAGTCTGATTACCAAGGTAACCTGTGTAGCATGATATGCAGCTCTGGATCCATATGTATCAAGCGTCTTGGAGTTCGGTATCTTATTTCATTAACTCCTGTTGTCCATTAAATAATGTAGAATAATGTTTCAACAATTGTAGGTTCATATTAATGTGTGAGGGAAATGTTGTTGTCTGAAGAAAGAGCCTTGAATTGTACATCTTGTCTCATACAATTATTGGTTCCTGTTGATGCTGGGTAGAAATGTGAGGGGGAGACGGTCATGACCCCTCAGACCTTTTGGCAGAATATGTTCAATAAGTTAAGATAGGAGACGGTGCCAGTCACATGCAGGAACCAAACGTCAATGATGAATAAATTTATGATTAatgtaaatcatgcaaatataacttgtctgtgtaaacAGTATATAAGAGAACTAACGGGACTGTCCCGAAAGAGCTCCAGACCGTACTCTGGTGTTTTAAGTTTGCTGAAACCTCTCCAGCTTCCTGATAATAAATCATTATTCATTTAAGTTTTA

Function

NR:

description
zinc finger protein 501-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570228.2 False 2251 mRNA 0.44 3 8976600 8981642
XM_036940165.1 False 2183 mRNA 0.43 3 8976600 8981755
XM_036940166.1 False 2099 mRNA 0.43 4 8976600 8981755
XM_021570227.2 True 2170 mRNA 0.43 3 8976600 8981775
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494947 NA coding downstream 4119 8960307 ~ 8972481 (-)
LOC118938195 LOC106589327 coding downstream 23872 8949632 ~ 8952728 (-)
LOC118938196 LOC106589327 coding downstream 28224 8945280 ~ 8948376 (-)
LOC118938527 LOC106594753 coding downstream 37955 8932934 ~ 8938645 (-)
LOC118938526 NA coding downstream 46876 8928606 ~ 8929724 (-)
LOC110495076 LOC106564415 coding upstream 53742 9035517 ~ 9040840 (-)
LOC110495075 LOC106599573 coding upstream 67975 9049750 ~ 9057694 (-)
LOC110509201 LOC106564418 coding upstream 83555 9065330 ~ 9074824 (-)
LOC110508389 LOC106564395 coding upstream 97440 9079215 ~ 9083746 (-)
LOC110508391 LOC106564394 coding upstream 108507 9090282 ~ 9095518 (-)
LOC118938191 NA non-coding downstream 60583 8914078 ~ 8921063 (-)
G1141654 LOC106591397 non-coding downstream 90736 8838678 ~ 8885864 (-)
LOC118938192 NA non-coding downstream 98552 8874034 ~ 8878068 (-)
G1141655 NA non-coding downstream 134621 8841329 ~ 8841979 (-)
G1141652 NA non-coding downstream 139093 8836848 ~ 8837507 (-)
G1141717 NA non-coding upstream 22100 9003875 ~ 9054670 (-)
G1141791 LOC106564380 non-coding upstream 157117 9138892 ~ 9140210 (-)
G1141792 LOC106564390 non-coding upstream 159492 9141267 ~ 9175400 (-)
G1141799 LOC106564380 non-coding upstream 184757 9166532 ~ 9169332 (-)
G1141636 cbx6 other downstream 179388 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 244817 8729223 ~ 8738426 (-)
ncf4 p40phox other downstream 309504 8655106 ~ 8696718 (-)
G1141579 NA other downstream 383702 8590965 ~ 8592898 (-)
G1141790 NA other upstream 233365 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 376304 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 685470 9666379 ~ 9669182 (-)
G1142121 NA other upstream 998573 9980348 ~ 9982266 (-)
lgals2b LOC106590712 other upstream 1116147 10097922 ~ 10102555 (-)

Expression

LOC110494900(LOC106599267) Expression in all Baseline Samples

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LOC110494900(LOC106599267) Expression in each Bioproject

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LOC110494900(LOC106599267) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network