LOC110508389 (LOC106564395)


Basic Information

Item Value
gene id LOC110508389
gene name LOC106564395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9079215 ~ 9083746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940171.1
GCTGTTACCCAGCGCtcacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGTTTTCTACGAAGGTACCACttcccatctttctgtctctctatttccctctttctcctccttctcctgacctccctctcttcttccccctctgtCTTTTCCCTTCCTCCATCAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA
>XM_021588893.2
GAAACGACGCTGTTACCCAGCGCtcacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGTTTTCTACGAAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA
>XM_036940169.1
ACGGTAGAAACGACGCTGTTACCCAGCGCtcacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGTTTTCTACGAAGGTACCGTAAACttcccatctttctgtctctctatttccctctttctcctccttctcctgacctccctctcttcttccccctctgtCTTTTCCCTTCCTCCATCAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA
>XM_036940170.1
ACGGTAGAAACGACGCTGTTACCCAGCGCtcacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGTTTTCTACGAAGACttcccatctttctgtctctctatttccctctttctcctccttctcctgacctccctctcttcttccccctctgtCTTTTCCCTTCCTCCATCAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA
>XM_021588892.2
AAACACTGGGCTTGTTCCGACATTGCAGCCGATTGACTGATCTGgaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACCAAGGTTGTTGTTACGGTAGAACCGTCTACCGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCtcacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGTTTTCTACGAAGGTACCGTAAGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA
>XM_021588891.2
gagagGTGTGTAATAAGGAACCTATGAGTCACTGTGAAAGAACCAGTGGTATGGTGCCATTCTACACTTCTAGAGAATTGGGGAGGAAGGACTTGAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCGAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTAAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCGCCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTCGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGACGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCCATCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCCAGCCTGGAGTGTTTGAAGGAGTTACAGACCAAAATCACACAGTAATGATAATGTAATGTATTATGTATGTAATTGCATATTATGAAAGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACGTACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTTGTTTGATCAAAATAAACATGTGATTTCTATTA

Function

NR:

description
uncharacterized protein LOC110508389 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940171.1 False 1550 mRNA 0.52 4 9079215 9083028
XM_021588893.2 False 1457 mRNA 0.52 4 9079215 9083036
XM_036940169.1 False 1568 mRNA 0.52 4 9079215 9083042
XM_036940170.1 False 1559 mRNA 0.52 4 9079215 9083042
XM_021588892.2 False 1673 mRNA 0.51 4 9079215 9083243
XM_021588891.2 True 1444 mRNA 0.52 4 9079215 9083746

Neighbor

gene id symbol gene type direction distance location
LOC110509201 LOC106564418 coding downstream 4391 9065330 ~ 9074824 (-)
LOC110495075 LOC106599573 coding downstream 21521 9049750 ~ 9057694 (-)
LOC110495076 LOC106564415 coding downstream 38375 9035517 ~ 9040840 (-)
LOC110494900 LOC106599267 coding downstream 97440 8976600 ~ 8981775 (-)
LOC110494947 NA coding downstream 106734 8960307 ~ 8972481 (-)
LOC110508391 LOC106564394 coding upstream 6536 9090282 ~ 9095518 (-)
LOC118938193 LOC106564393 coding upstream 17119 9100865 ~ 9111626 (-)
LOC110494932 LOC106591120 coding upstream 30357 9114103 ~ 9119656 (-)
LOC118938197 LOC106592628 coding upstream 143708 9227454 ~ 9246756 (-)
LOC110485598 LOC106590617 coding upstream 192056 9275802 ~ 9351916 (-)
G1141717 NA non-coding downstream 24545 9003875 ~ 9054670 (-)
LOC118938191 NA non-coding downstream 163198 8914078 ~ 8921063 (-)
G1141654 LOC106591397 non-coding downstream 193351 8838678 ~ 8885864 (-)
G1141791 LOC106564380 non-coding upstream 55146 9138892 ~ 9140210 (-)
G1141792 LOC106564390 non-coding upstream 57521 9141267 ~ 9175400 (-)
G1141799 LOC106564380 non-coding upstream 82786 9166532 ~ 9169332 (-)
G1141807 NA non-coding upstream 115967 9199713 ~ 9199958 (-)
G1141794 LOC106564387 non-coding upstream 116965 9200711 ~ 9203621 (-)
G1141636 cbx6 other downstream 282003 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 347432 8729223 ~ 8738426 (-)
ncf4 p40phox other downstream 412119 8655106 ~ 8696718 (-)
G1141579 NA other downstream 486317 8590965 ~ 8592898 (-)
G1141790 NA other upstream 131394 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 274333 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 583499 9666379 ~ 9669182 (-)
G1142121 NA other upstream 896602 9980348 ~ 9982266 (-)
lgals2b LOC106590712 other upstream 1014176 10097922 ~ 10102555 (-)

Expression

LOC110508389(LOC106564395) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110508389(LOC106564395) Expression in each Bioproject

Bar chart with 21 bars.
LOC110508389(LOC106564395) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network