LOC118938528 (LOC106564434)


Basic Information

Item Value
gene id LOC118938528
gene name LOC106564434
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9575964 ~ 9580251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942583.1
ATGACCATCTACCTCCCCACAGCCGCCCCCTCAATGCCTGAGCCCAACaccttccccccctcccctctcttcctcctcacccCTGACCCTTTCTTCAATGGATCCTACCACAACTGGACCAACCCTGGCGGTGGAGGCGTGGGGGGTTTCCAACTCACTATAGCAGGGGTCCTTATCCCCCTCATCTATGTAGCAGTCTGTGTGATCGGCCTGGTGGGCAACACATTGGTCATCTACATTGTTTTAAACTATGTGAGGACGGAGTCGGTCACTAACATCTATATACTCAACCTGGCCATCGCTGATGAGCTGTTCATGCTAGGCCTCCCCTTCCTGGCGGTCCAGAACGCTCTTCTCTCCTGGCCGTTTGGTTCTCTCATGTGCCGTGTGGTCATGACTGTGGACGCCATCAACCAGTTCACCGCCATCTTCTGTCTCACGGTCATGTCCATCGACCGCTACCTCGCAGTGGTCCATCCCATACGGTCGTCGTGGTGGAGGCGACCGCACGTGGCCAAGGCGGTGAACGCGGCGGTGTGGGCAGTGTCGTTTGTGGTGGTGCTGCCCGTGGTGGTGTTTGCGGACGTACTGGAGGATGATGGGAACTGTAGTATAGTGTGGCCTGAGCCAGCCGAGGTCTGGAAGGCATCGTTCATCGTGTACACGTGCACGGTCGGGTTCTTCGGACCGCTACTCGTCATCTGTCTCTGCTACCTGCTCATTGTGATCAAGGTGCGCAACGCGGGGAAACGGGCCCGGTCCACCTCCTCCCGACGCAGGAAGTCCGAACGCAAGATCACCCGCATGGTGGTTGTCGTGGTAGCAGTGTTCGTGTTGTGCTGGCTCCCATTCTACATCCTCAACATCGTTAACCTGCTAATCCTGTTACCGGGCGAATTCCGGGGGCTGTACTACTTTGTGGTGGTCCTATCGTACACTAATAGCTGCGCTAACCCAATAATTTACGGATTCCTGTCCGATAATTTTAAGAGAGGGTTCCGGAAGGCTCTTTGTCGTTCTTCGAGGAGGGTGGAGAACCACGAGAGAGCGGCAGCCACCGAGCTGCAGCGCCCTGCAGAGCTCTGGAGGGGAATTGCGCCCGAGCCGCGAGATGGCCTGGGGGTCACCAAGTCTCAtgaaggaggggaggaagaagtggaggaggaagaggagaacgggatagagatggagagaagagaagatgcCACTCAGATGAGAGAGAACTGCAGGATTGCACAGAACGGGAACGGAGGAGGACAAGTTGAGAGCTCCAGGATCTTGTTCACTCCGGGGGGAAATGTGGAGACGGTACCCCTGGGGCAGAGGGCTAAAGCTGGGGAGGAGGCTGGGAAAGGCCCAGGCTTAGAATTGGGGCCTACTGTCGCTGCCTCCACTCTTGCCAATGGATCAAAGAGTGAAAGTAACAGGTCACGTCCAGACACAGTGGAGAAGAGCCCCAAGCTACAGATCAGCTACCTGTAA

Function

NR:

description
PREDICTED: somatostatin receptor type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942583.1 True 1482 mRNA 0.57 3 9575964 9580251

Neighbor

gene id symbol gene type direction distance location
LOC110485557 rayl coding downstream 36708 9520385 ~ 9539256 (-)
LOC118936472 LOC106594459 coding downstream 168618 9399077 ~ 9407346 (-)
LOC110485597 LOC106590780 coding downstream 190159 9356000 ~ 9385805 (-)
LOC110485598 LOC106590617 coding downstream 224048 9275802 ~ 9351916 (-)
LOC118938197 LOC106592628 coding downstream 329208 9227454 ~ 9246756 (-)
LOC118936521 LOC107087645 coding upstream 50116 9630367 ~ 9652155 (-)
LOC118938201 LOC106590876 coding upstream 91677 9671928 ~ 9695020 (-)
LOC118938202 LOC106592503 coding upstream 115199 9695450 ~ 9699472 (-)
LOC118938203 NA coding upstream 435618 10015869 ~ 10074621 (-)
lgals2b LOC106590712 coding upstream 517696 10097922 ~ 10102555 (-)
G1141947 NA non-coding downstream 1772 9570411 ~ 9574192 (-)
G1141948 NA non-coding downstream 4244 9571217 ~ 9571720 (-)
G1141940 NA non-coding downstream 13493 9561647 ~ 9562471 (-)
G1141941 NA non-coding downstream 14493 9559345 ~ 9561471 (-)
G1141921 NA non-coding downstream 40224 9535411 ~ 9535740 (-)
G1141960 NA non-coding upstream 39642 9619893 ~ 9620315 (-)
G1141968 NA non-coding upstream 67696 9647947 ~ 9648199 (-)
G1141971 NA non-coding upstream 70249 9650500 ~ 9651147 (-)
G1141973 cyh2 non-coding upstream 86128 9666379 ~ 9669182 (-)
G1141974 NA non-coding upstream 89512 9669763 ~ 9670001 (-)
G1141790 NA other downstream 359666 9215140 ~ 9216298 (-)
LOC110494947 NA other downstream 610256 8960307 ~ 8972481 (-)
G1141636 cbx6 other downstream 778752 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 844181 8729223 ~ 8738426 (-)
G1142121 NA other upstream 400097 9980348 ~ 9982266 (-)
G1142620 NA other upstream 715493 10295744 ~ 10299367 (-)
G1142757 NA other upstream 984209 10564460 ~ 10566465 (-)

Expression


Co-expression Network