LOC110494920 (LOC106596927)



Basic Information


Item Value
gene id LOC110494920
gene name LOC106596927
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9613512 ~ 9614354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021570255.2
ATGAAGACCATGAAGATCCTGAGCGGTGTTCTGATACTCTCCCTGATGTTGGCCGAGACCACGTTGGGCGACATTCAGAAGAGAGTGGTCGGGGGAAACACGTGCAGTCCCACTGAAAGGCGATACCATGTCCGTTTGACAGCTAAAACTCCAACGAACGGATTGGAAAAGCTCTGTGGCAGCTCTCTGATCACCAACAGGTGGCTTCTAACCGCCGCTCGCTGTTGGCCTGCTGGACCAGAATGGAAGATGTATGCAGAAGTAGGTGGACATCCCGGCCCTGTGAAACCTCAAGTAGAAATCAAACAGAAGATGATACATACAGATAAGAAAGGAAAAACCCATGACATCATGCTACTGCAGTTACCAACTCCTGTTCCGGGAGCTATTCCAGGTCCTGGGGTTGATCCAATCCCTCTTGGTGATTGTACACAATTTTTGGCCAAACTTCGGGGGAAGACATCTAAACCAGAAGAGTTCCAAACAGTTCAGATTGCAGGCTATGATGCCACTACACCTGCTGCTCCTGACGCTGGGGTACCTGATGCTGAGgaccctgctgctgaggcacctgatgctgccaccaccagagTCCTACATTGTGCAGAGGTGGATGTTATGAAATGTGACGCCTCCGTGGCAAAGTCCCATCAAGACATCTTCTGTGCACAACGTGCCGGAGTGGAGACCTGTAGAAGTGACTCTGGAGCAGGTGTGGTGTATAAGAACCAGCTCTATGGTGTCTTCATCGCTGAGGACAATGGTGAAGAATGTTCTGCAGCGGCAATCATCATGGATGTCTGCAAGTACAAAGATTGGATAAAGAAGGTAACTGGAAAATAA

Function


NR:

description
kallikrein-8-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021570255.2 True 843 mRNA 0.50 1 9613512 9614354

Neighbor


gene id symbol gene type direction distance location
cuta cuta coding upstream 44896 9562754 ~ 9568616 (+)
LOC118936367 LOC106564430 coding upstream 51508 9545143 ~ 9562471 (+)
LOC118938198 cacng2 coding upstream 101382 9418513 ~ 9512130 (+)
LOC118938199 NA coding upstream 163747 9448403 ~ 9449765 (+)
LOC110487257 tmprss6 coding upstream 390621 9208432 ~ 9222891 (+)
LOC118938200 cyh2 coding downstream 39638 9653992 ~ 9668271 (+)
LOC110495064 LOC103356706 coding downstream 228094 9842448 ~ 9906194 (+)
LOC118938529 LOC106593343 coding downstream 293742 9908096 ~ 9909121 (+)
LOC110487510 LOC101464297 coding downstream 295222 9909576 ~ 9975859 (+)
LOC110493424 LOC106564439 coding downstream 361535 9975889 ~ 10004759 (+)
G1141284 NA non-coding upstream 70636 9542628 ~ 9542876 (+)
G1141283 NA non-coding upstream 71703 9541336 ~ 9541809 (+)
G1141275 LOC106564432 non-coding upstream 91390 9520421 ~ 9522122 (+)
G1141231 NA non-coding upstream 208055 9403979 ~ 9405457 (+)
G1141312 NA non-coding downstream 3488 9617842 ~ 9618143 (+)
G1141315 NA non-coding downstream 7725 9622079 ~ 9622310 (+)
G1141299 NA non-coding downstream 37347 9651701 ~ 9652277 (+)
G1141332 NA non-coding downstream 55583 9669937 ~ 9670166 (+)
G1141333 NA non-coding downstream 55966 9670320 ~ 9670534 (+)
G1141017 LOC106564394 other upstream 518032 9049219 ~ 9095480 (+)
LOC110487255 LOC106591397 other upstream 772717 8828237 ~ 8840946 (+)
cbx6a cbx6 other upstream 819467 8790681 ~ 8810954 (+)
G1141316 NA other downstream 9245 9623599 ~ 9624826 (+)
LOC118938204 NA other downstream 396973 10011327 ~ 10015855 (+)
G1142146 NA other downstream 411663 10026017 ~ 10026234 (+)
G1142240 NA other downstream 681899 10296253 ~ 10299364 (+)

Expression


LOC110494920(LOC106596927) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110494920(LOC106596927) Expression in each Bioproject

Bar chart with 12 bars.
LOC110494920(LOC106596927) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network