LOC118936521 (LOC107087645)


Basic Information

Item Value
gene id LOC118936521
gene name LOC107087645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9630367 ~ 9652155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940186.1
gtgagtgctGTAGCAACTTCCTGCTGTTGCATGAGGCATTGAGTTGCAgttattttctctctgtctgaaaCTCTGACAGACTGTTGCACAGAGAGAAGCGGGAGCTGACTGAAGCTAAGCAGGATGCAGGCTATCAAATGTGTTGTTGTGGGAGATGGAGCTGTGGGGAAAACATGTCTTCTCATCAGCTACACAACCAACGCTTTCCCTGGAGAATATATCCCTACtgtCTTTGATAACTACTCAGCCAATGTGATGGTGGACAGTAAGCCAGTCAACCTGGGTCTCTGGGATACAGCAGGACAGGAGGACTATGACAGACTGAGACCACTGTCCTACCCACAGACggaTGTGTTCCTCATCTGTTTCTCTCTGGTGAGCCCAGCCTCCTACGAGAACGTCAGAGCCAAGtgGTACCCAGAGGTGCGTCACCACTGCCCGTCAACCCCAATCATCCTAGTGGGTACTAAGCTGGATCTGAGGGACGAGAAGGAGACCATCGAGAAGCTCAAAGAGAAGAAACTGGCCCCCATCACCTACCCACAAGGCCTAGCGCTGGCCAAGGATGTTGactCTGTGAAGTACCTGGAGTGTTCTGCTCTGACCCAGCGTGGCCTGAAGACAGTGTTTGACGAGGCTATCAGGGCAGTACTCTGCCCACAGCCAACCAAGGTCGGGAAGAAGAAATGTCTACTGCTCTAACAgATGCAGCTAAGAGTGAAAACGGACAGCGAACAAACCAGGGAGCCAGATGTTAACTCAAAAAGGCCTTTTAGTTTTACTCTGCTACACGGAAAAACATTGACTTATGAAAGCCTACATGGTTAAATGAATATGAAATACTATATTTAGTGATGTTAATTATATTACGATGGTCTCTGACGTGTCCTTGTTTGGTACAGGTATATAGTGTAGGATAAAGGTGCACAATATTCATAATCTGAATAATATACTCTAATATTTTCCCCTCGACTGTGAAGGTGGTATTTGACCTTGATgtaagtgtgtcccaaatggcaccctattccctatgtgcacttctgaccagagccctggtacactacatagggaattggGTGTTAATTGGGACACACAAGATATTGTGTTGGTACACAATTAAACTCAATTTGCAAACACTGGTTATTGGTTATTATGAGTTGTAGTGTGATGAAGCCATTTGTCCAATGTATCTTGATCTGTTTCCAACCACTATATAAAGGACTGTTTATCTGTAA
>XM_036940187.1
gtgagtgctGTAGCAACTTCCTGCTGTTGCATGAGGCATTGAGTTGCAgttattttctctctgtctgaaaCTCTGACAGACTGTTGCACAGAGAGAAGCGGGAGCTGACTGAAGCTAAGCAGGATGCAGGCTATCAAATGTGTTGTTGTGGGAGATGGAGCTGTGGGGAAAACATGTCTTCTCATCAGCTACACAACCAACGCTTTCCCTGGAGAATATATCCCTACtgtCTTTGATAACTACTCAGCCAATGTGATGGTGGACAGTAAGCCAGTCAACCTGGGTCTCTGGGATACAGCAGGACAGGAGGACTATGACAGACTGAGACCACTGTCCTACCCACAGACggaTGTGTTCCTCATCTGTTTCTCTCTGGTGAGCCCAGCCTCCTACGAGAACGTCAGAGCCAAGtgGTACCCAGAGGTGCGTCACCACTGCCCGTCAACCCCAATCATCCTAGTGGGTACTAAGCTGGATCTGAGGGACGAGAAGGAGACCATCGAGAAGCTCAAAGAGAAGAAACTGGCCCCCATCACCTACCCACAAGGCCTAGCGCTGGCCAAGGATGTTGGTAGactCTGTGAAGTACCTGGAGTGTTCTGCTCTGACCCAGCGTGGCCTGAAGACAGTGTTTGA

Function

NR:

description
PREDICTED: ras-related C3 botulinum toxin substrate 3 isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940186.1 False 1235 mRNA 0.46 7 9630367 9652155
XM_036940187.1 True 636 mRNA 0.52 6 9631292 9652155

Neighbor

gene id symbol gene type direction distance location
LOC118938528 LOC106564434 coding downstream 50116 9575964 ~ 9580251 (-)
LOC110485557 rayl coding downstream 91111 9520385 ~ 9539256 (-)
LOC118936472 LOC106594459 coding downstream 223021 9399077 ~ 9407346 (-)
LOC110485597 LOC106590780 coding downstream 244562 9356000 ~ 9385805 (-)
LOC110485598 LOC106590617 coding downstream 278451 9275802 ~ 9351916 (-)
LOC118938201 LOC106590876 coding upstream 19773 9671928 ~ 9695020 (-)
LOC118938202 LOC106592503 coding upstream 43295 9695450 ~ 9699472 (-)
LOC118938203 NA coding upstream 363714 10015869 ~ 10074621 (-)
lgals2b LOC106590712 coding upstream 445792 10097922 ~ 10102555 (-)
LOC110516362 LOC106590757 coding upstream 661568 10313723 ~ 10322183 (-)
G1141960 NA non-coding downstream 10052 9619893 ~ 9620315 (-)
G1141947 NA non-coding downstream 56175 9570411 ~ 9574192 (-)
G1141948 NA non-coding downstream 58647 9571217 ~ 9571720 (-)
G1141940 NA non-coding downstream 67896 9561647 ~ 9562471 (-)
G1141941 NA non-coding downstream 68896 9559345 ~ 9561471 (-)
G1141973 cyh2 non-coding upstream 14224 9666379 ~ 9669182 (-)
G1141974 NA non-coding upstream 17608 9669763 ~ 9670001 (-)
G1141978 NA non-coding upstream 21776 9673931 ~ 9674196 (-)
G1141979 NA non-coding upstream 28837 9680992 ~ 9681336 (-)
G1141790 NA other downstream 414069 9215140 ~ 9216298 (-)
LOC110494947 NA other downstream 664659 8960307 ~ 8972481 (-)
G1141636 cbx6 other downstream 833155 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 898584 8729223 ~ 8738426 (-)
G1142121 NA other upstream 328193 9980348 ~ 9982266 (-)
G1142620 NA other upstream 643589 10295744 ~ 10299367 (-)
G1142757 NA other upstream 912305 10564460 ~ 10566465 (-)

Expression


Co-expression Network