LOC118938201 (LOC106590876)


Basic Information

Item Value
gene id LOC118938201
gene name LOC106590876
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9671928 ~ 9695020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940190.1
GTTTttcccccagagttcccagttgtatggaatgcactgaagtcggagatttccgGGTTCCACGTTCCCAGTTTTCTGAACGCAGCATTTGAGGTTAGCTGTCAAAGTCAAACGTCACACAGGTAgcctaggtaggtaggtaggtaaccGTGTATCTCCCGGATCCTTTTAAAATCACACGGTAGCGGTTGTGCGACTTTACACATAGGCTTCAGTCCAGCGGTGACACAGCGGTGTCCAGCCATGGCCGAGTCCCAGCTAACATGCATGGAGGACGGCCACATCAAAGAGAACGTCCCGGAGTCCAAACCGGAGTTTTACTACAGCGAAGAACAACGAGCGGCGGTTGAACAACTGCTCAAAAACGGTGACGGCGCTTTCAAAATGCGACTGAAAGAGGACAAAGTGAAAGACTTTCTCTCGGCCCGTGATATTAAAACGATAAGGAACACTTTCAAAGAATATGACACTGAAGATGAAGAGAAGTGCGGAGAATTAAAAGCGAAACCCGACGATTCCAAAGCGAACTCGGGCCACCATTCGACGTACTGGCCGCAGATGTCGGATACAGAGGTACCGCCGTTGGATCTCGGTTGGCCCAACGGGGGTTTGTTCAAGGGGGTCACACGCGTGGCGGTTCACACGCACCCGCCAAAAGAGAACGGACCGCACATCAAGGAGGTCATTCGTAGGCTGATCCAAGAAGCTACCAAGGTGTTAGCTATAGTCATGGACCTGCTGACAGACATCCAGATACTGCAGGACCTGCTGGACGCAGCGTCGCGGCGCTCCGTGGCCGTCTACATCCTGTTGGATGTCAGCGGGGTTCCGCACTTCCTGGATATGTGCTGCAGGCTGCAGGTCGGAACTCAGCACCTGCGGaacatcaggactcgtacagttcaggggacagggttgggtctgtcCTTCGGTAGACTCCTTGGTTCTTTGTGTAGTAAATACATGCTGGTGGATGGGGACAAAGTCATGTTCGGCTCCTACAGCTTCTCATGGAGTTCGTCTCGGATGGACCGCAACATGATCACGGTCATGACTGGCCAGGTGATCGACTTCTTCGACCGCGACTTCTGCGAGCTCTACGCCGTGTCCGAAAAACTGGACCTCTACAAGGAGTTCAACCTCAGCCCACCTCCCAAAATGGCCGCCGCCACGCAGCTCAAAGTGGAGCCTGTAAAACCCCAGTTACGAGCCGCCACATCCAGATTCCAGGTCAGTCTAGGCAACTTGCGTGGAGGTGATCTCCAGGTGCCTGCACATAAATACCACAACCCCAAATACTCTTTGGTGTACGGGAATAATGTTCCTGGACTGATGGGGTCCTTGCAGGATCTACCAGGCATAGAAAAGACGGCTATAACTGCGGGTCCTGAGGGACTAATGCAGGTGAACAGCGAGTGGTTGGATCAACTCACCCCGCTACCACCCGACAGCGGGAAGGTAGGGCCCAAAAAAACCAACAGCATTTTGGAGAAGAAATCCCGCTCTTCTTTTAAAAAACTCTTCAAGGGGAAATCGACAGCCAATCAGAGCGTGGACACCGGGGGTGATAGCCCGGCAACCAGTCCAATCTCCTCCCCCACATCGTTGGGAACCAATAGTATGGAGGAGATGAATAACCTTGAAGTCATGGTGAAACAACCAATGAAGAGTAAGAAGTTTAAAACGAGCCTGAAGAGTGCTTCTCAACAGACTGTCAACACACAGGACAATGACAGCTTGAAGAGCCGCAGGCCATCAACAAAGAACAAATGTAGTCCATCCTGATTCAAAACCTGAGTCACTCCGGATTCAAACCACCCCACTCAACTGGTTCTCTGTGGGACTCCATAATACCTTTGGGATCTGGTGCAATAATTACTATAATGTGTCAATTGTACTTGCTCTGTACAGAGATATTCTCTGGACAAACAGAGCCGTCCTGAAAGCAGAGACCGGCGATAGATGGAACAGCGCCACTGGCCGCCCCCAGGAACATTAgttgttgtttttcttttgaggAAAAGAGCGTCCATGTCTGAAGTAACGTCTTCGTCGTCGTAAAGTGTAACGTGGACCTGGCGGTTTCATCGCTATGGATACCAGGATGAGGAGGCGGTGTCACTGAGCACCAAGTCTGGGATTCTTATTTCACCATGTAAAGAATAACGCCATGTTGCCTTGTGAAGTCTTGTATGTCATTAATGTGTCAttaattaatgtgtgtgtttcatgctGTGACCAACGTATGTCAATGATAAGGGGGTTGTGGAATGGATCTGAATGGGTATTTAAGTGTGTGTTTATTCAGTACATTAAAAACAATCGTGTTTTTCT
>TU1302255
GGAAATCGACAGCCAATCAGAGCGTGGACACCGGGGGTGATAGCCCGGCAACCAGTCCAATCTCCTCCCCCACATCGTTGGGAACCAATAGTATGGAGGAGATGAATAACCTTGAAGTCATGGTGAAACAACCAATGAAGAGTAAGAAGTTTAAAACGAGCCTGAAGAGTGCTTCTCAACAGACTGTCAACACACAGGACAATGACAGCTTGAAGAGCCGCAGGCCATCAACAAAGAACAAATGTAGTCCATCCTGATTCAAAACCTGAGTCACTCCGGATTCAAACCACCCCACTCAACTGGTTCTCTGTGGGACTCCATAATACCTTTGGGATCTGGTGCAATAATTACTATAATGTGTCAATTGTACTTGCTCTGTACAGAGATATTCTCTGGACAAACAGAGCCGTCCTGAAAGCAGAGACCGGCGATAGATGGAACAGCGCCACTGGCCGCCCCCAGGAACATTAgttgttgtttttcttttgaggAAAAGAGCGTCCATGTCTGAAGTAACGTCT

Function

NR:

description
protein FAM83F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940190.1 False 2334 mRNA 0.50 5 9671928 9695020
TU1302255 True 521 lncRNA 0.47 2 9672213 9673025

Neighbor

gene id symbol gene type direction distance location
LOC118936521 LOC107087645 coding downstream 19773 9630367 ~ 9652155 (-)
LOC118938528 LOC106564434 coding downstream 91677 9575964 ~ 9580251 (-)
LOC110485557 rayl coding downstream 132672 9520385 ~ 9539256 (-)
LOC118936472 LOC106594459 coding downstream 264582 9399077 ~ 9407346 (-)
LOC110485597 LOC106590780 coding downstream 286123 9356000 ~ 9385805 (-)
LOC118938202 LOC106592503 coding upstream 430 9695450 ~ 9699472 (-)
LOC118938203 NA coding upstream 320849 10015869 ~ 10074621 (-)
lgals2b LOC106590712 coding upstream 402927 10097922 ~ 10102555 (-)
LOC110516362 LOC106590757 coding upstream 618703 10313723 ~ 10322183 (-)
LOC110487259 LOC106593718 coding upstream 939129 10634149 ~ 10657332 (-)
G1141974 NA non-coding downstream 1927 9669763 ~ 9670001 (-)
G1141973 cyh2 non-coding downstream 3918 9666379 ~ 9669182 (-)
G1141971 NA non-coding downstream 20781 9650500 ~ 9651147 (-)
G1141968 NA non-coding downstream 23729 9647947 ~ 9648199 (-)
G1141960 NA non-coding downstream 51613 9619893 ~ 9620315 (-)
G1141985 NA non-coding upstream 5745 9700765 ~ 9700985 (-)
G1141987 NA non-coding upstream 8833 9703853 ~ 9718763 (-)
G1141988 NA non-coding upstream 9150 9704170 ~ 9704605 (-)
G1142007 NA non-coding upstream 73826 9768846 ~ 9769196 (-)
G1142012 NA non-coding upstream 79977 9774997 ~ 9830872 (-)
G1141790 NA other downstream 455630 9215140 ~ 9216298 (-)
LOC110494947 NA other downstream 706220 8960307 ~ 8972481 (-)
G1141636 cbx6 other downstream 874716 8793857 ~ 8797212 (-)
G1142121 NA other upstream 285328 9980348 ~ 9982266 (-)
G1142620 NA other upstream 600724 10295744 ~ 10299367 (-)
G1142757 NA other upstream 869440 10564460 ~ 10566465 (-)
LOC110494931 cacna1a other upstream 1125404 10780341 ~ 10913542 (-)
G1141978 NA non-coding upstream 906 9673931 ~ 9674196 (-)
G1141979 NA non-coding upstream 7967 9680992 ~ 9681336 (-)
G1141980 NA non-coding upstream 10557 9683582 ~ 9683823 (-)

Expression


Co-expression Network