LOC110487259 (LOC106593718)


Basic Information

Item Value
gene id LOC110487259
gene name LOC106593718
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10634149 ~ 10657332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942342.1
ATATCTCCTCCCTTCCGCTGGCGCTGAAACTCGAGAGAGAAGTGACAGGTAGGAAGACCGTTGTGTAGCTacgagaccagacagacagactcacataGACACAAATGTCAAACTCATGAAAGAAAATGGTTCATAGAAAAGTCGACAGCTGGTGAGAGAGACCGTTATAAAAGTTTTGATGGGAAGTTGCCAGAGAAATGCATATTTTGATAATACACTTTACAACTTCGATGTGGATAATTTCATATTTAAGATCACAATGAGTGGACAGCAAACTTTTTTAAACTTAAAATTGTCACAACAAAAATGAATTTATAGCCCATATAAAATACGTGGGGCAGTGTCAGAATGATTTGTCAACGGAAGGCGCTTGTCATTGGAGGATGCTCACTAAATTAGATCAGAATACATGACAGAAGGAAGTTGTGGATGTGTTCAACGGGTCGAGACATAATACTCCCTTGATCACAGACACTTTCTATCCCTCTTCAAATGAAATAGCCTACAATCTCAGTTCATCATGCATAGAAGGAGGATGCTTCGGGCACTCCCTGTTTTTATATTAATGTTCTTCATCGTTTTAATCGTGGACTTTCAACTAAGGACGCGGAATCTCCACAAACTCAATTCTATTCACAATCCGTTCGGGGGAGACTTACTGCGCTCGATTCAAGAGACGCCTCTCTCCGCGGCAAAGGAGCCACCAAAGCCGGCCAAGTTTCCTCGACAACCCGCTGCTGTCTCTACTATGAACCAGACTGTTGGTGGCTTACAAGCGGAGatacagagaaggagagacaagTTGAGGGCTTTGGAACAGAGAAGGGTTGTCATCACTCCATCCCTGTTGAGGTTAACGGACATCTTCCTCGCGGTGAAGAGCACCGGGAGGTTCCACGGCAcgcgcctctctctcctcctcgagACGTGGATCTCCAAGACCAAGGAGCACaCTTTCATCTTTACAGACACGGAGGATGAAGACGTCACCTCCAGAGGTTACAATGTGATTGTGACAGATTGTCCGTCGGACCACAGTCACCAGGCTCTGTCCTGTAAGATGTCTGCTGAATATGACCACTTCATGGCCTCCGATAAGAAgtGGCTGTGTCATGTTGACGATGATAACTACGTGAATCCTGGAGCTCTTCTCTCCCTGCTCTCAGCCTTCCCCCAAGACGGTGATGTCTACGTGGGCAAGCCCAGCCTCGACCACCCCATCAAGGCCCATGAACTACTGGAGAGCAACAAGACAAAAGAAGTGCAGTTCTGGTTTGCCACGGGAGGAGCAGGCTTCTGTCTGAGTCGCAGACTAGCTGAGAAGATGGCTCCATGGGCtagTGGTCCCAGGTTTGAGCAGACGTCAGCAGTGATCCGTCTGCCAGATGACTGTACAGTAGGCTTCATCGTAGAGAGAAGACTGGGGATATCCATGGTCCACAGTTCAATGTTCCACTCTCACCTGGAGAACCTGCTACTGCTGACGCCCAGCAATATACCTCTACAGgtgaCTCTTAGTTATGGGCTGTTTGAGAACAAGATGAACAGTGTGGAGCTGAATAGACTCTTCTCCAAGGAGGATGATCCCTCCAGGTTTAAGACGGTCCACTGTCTACTCTATCCACTGACCAGCTGGTGCCCTTGAAGACTCCAACTCCCAGCAGCACCTGTGCCTCCTGAGACTTTCCCAAATGGTGTCAGCACTTCCTGgattctctcttttctcctgaagtgtacactcgtTTACTACTTCCAACAAATCTATAAGTGATGGGTTGGTCGAGGTATGGGCTAGTGGGGGTTTCACCCTTGCGTCTTACCCCGGTCATTAACCTTGAAATCAGTGTACAAACTTTGGGAGcaaggagagataattgggacaCAGCCCTGGTTTTACATGGAAATAACAGGGACGACAAGCATTAGTCTGGTGCAGAATGCAGCCTGCACTTCCTGTAGGCTATCGACTTATTCTAGGAGTTCTAGGAGCCCTCCAGATCCCTTACCAAGACTAGGAGCCCTCCAGAGCCCTTAACAAGACTAGGAGCCCTCCAGAGCCCTTACCAAGACTAGGAGCCCTCCAGATCCCTTAACAAGACTAGGAGCCCTCCAGAGCCCTTAACAAGACTAGGAGCCCTCCAGAGCCCTTAACAAGACTAGGAGCCCTCCAGAGCCCTTAACAAGACTAGGAGCCCTCCAGAGCCCTTACCAAGACAGAACTTGCATCATTTATTTGCAGGTGTGTATATTTGTTGAACAGAGACCAAAATAATtatgaatatacttttttttatagaTTTGCAAAACTTCTTATGATGACCTCTGGTGAAACTCACTGCTGTAAAATATCTGCCGTTTTTTTAATCTGTTCTGTTATGAAAACTGTTTTGAAATTGTTGGAAAGGcgtgtttttatttaattttaacaCCTTGTTTAACTTTAAAAGTGTATTCACGTCCCAGTCTGGGCTGTCTGTACATAGTTCCTGATTTCTGCAAAGCCTGAAAGAATCAAcatggtttatacagccttgaaggaga
>TU1303203
ATGACCTCTGGTGAAACTCACTGCTGTAAAATATCTGCCGTTTTTTTAATCTGTTCTGTTATGAAAACTGTTTTGAAATTGTTGGAAAGGcgtgtttttatttaattttaacaCCTTGTTTAACTTTAAAAGTGTATTCACGTCCCAGTCTGGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942342.1 False 2541 mRNA 0.47 8 10634149 10657332
TU1303203 True 156 lncRNA 0.34 1 10634219 10634374

Neighbor

gene id symbol gene type direction distance location
LOC110516362 LOC106590757 coding downstream 311966 10313723 ~ 10322183 (-)
lgals2b LOC106590712 coding downstream 531594 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 559528 10015869 ~ 10074621 (-)
LOC118938202 LOC106592503 coding downstream 934677 9695450 ~ 9699472 (-)
LOC118938201 LOC106590876 coding downstream 939129 9671928 ~ 9695020 (-)
LOC110485344 trmt1 coding upstream 39694 10697026 ~ 10717367 (-)
LOC110487189 LOC106590640 coding upstream 83473 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 123009 10780341 ~ 10913542 (-)
LOC118938429 NA coding upstream 324350 10981682 ~ 11101213 (-)
LOC118938431 LOC106564445 coding upstream 450214 11107546 ~ 11110630 (-)
G1142776 NA non-coding downstream 16674 10617202 ~ 10617475 (-)
G1142728 NA non-coding downstream 149117 10479911 ~ 10485032 (-)
G1142727 NA non-coding downstream 154825 10478337 ~ 10479324 (-)
G1142724 NA non-coding downstream 158913 10474606 ~ 10475236 (-)
G1142670 NA non-coding downstream 279282 10354481 ~ 10354867 (-)
G1142506 NA non-coding upstream 13438 10670770 ~ 10671856 (-)
G1142798 LOC106593677 non-coding upstream 14656 10671988 ~ 10672980 (-)
G1142797 NA non-coding upstream 15969 10673301 ~ 10675541 (-)
G1142800 LOC106593677 non-coding upstream 23064 10680396 ~ 10682161 (-)
G1142801 NA non-coding upstream 30830 10688162 ~ 10689190 (-)
G1142757 NA other downstream 67684 10564460 ~ 10566465 (-)
G1142620 NA other downstream 334782 10295744 ~ 10299367 (-)
G1142121 NA other downstream 651883 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 964967 9666379 ~ 9669182 (-)
G1143380 NA other upstream 500554 11157886 ~ 11159261 (-)
G1143449 NA other upstream 623730 11281062 ~ 11282092 (-)
LOC110485554 LOC106590435 other upstream 770358 11425756 ~ 11429422 (-)
LOC118938427 LOC106564452 other upstream 798242 11447021 ~ 11494371 (-)
G1142783 NA non-coding upstream 12405 10646779 ~ 10647803 (-)

Expression


Co-expression Network