LOC110485344 (trmt1)


Basic Information

Item Value
gene id LOC110485344
gene name trmt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10697026 ~ 10717367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942321.1
TCGAAACGCCTTTTTGCCTCTTTCTGTTTGGTTCTGCGGGTTTCTGTAGTTGTGGTCCATGCATATCTGCGTCCATGTGTTAACTTGAGTTTTGCAACAAATAGCTAGTGAGTTATTACCGTTGTCATACAGTAAATATACATAATCATCAAATACAGCTACATGTTAAGTTGTCAACTTGGGAAAGTGCGCCGCAGATAAGGACTGAGAAGTGCCCTATGCTGATCATCACTGCTCGGCTACTCCCCCTCTTAACTGTACCCTTCACCCACCAGAGGATTCTAAGGACAGTTGTTGCCTACAGGGGACTGAGAACCATGGAGCCCCTCAGGGCCCCTCAGGATCCACAAGTTAACACCACCCTGTCTGGGGTAGACACCAAGCCTCAGCCCCCTACTTCTGGAGCCCCAATGGAGGGCTTGAACCCAAGTCCAGCTGCCTCAACACCTGACCAGGAGATGCCCCCGACAACAGGGTTGTTGCCAGGGGAGACAGTTGTCAGGGAGGGCAAGGCAGCCATATTGTTTCCCAGTGCCAACGAGGTGTTTTACAACCCTGTGCAGGAGTTCAACAGAGATCTGACGTGTGCGGTGGTTACAGAGTTTGCCCGGGAGCAGATGGCCCGGAGGGGGGTGAAGGTGGTAGTgccaggggagaaggagagggtggtGGTCAATCTAGCTGACgagaagaaagaggagacagagatgcagacaggggaggaaggaggagaggagccagtCGTAACTGCTTCAGTGGGGGAGTGCTGTAAGAATGGTCTGCGTGTGTTGGAGGGTCTGGCAGCGTCTGGCCTACGCTCTGTGAGGTTTGCTCTGGAGGTGCCTGGTCTACGTAGCGTCACGGCTAACGACTTCTCAGCCAAGGCTGCTGCCCTCATCGCCCGCAATGCCCAGCACAACGGAGTCACACACCTACTGCAGGCCAGCCAGAGAGATGCCAGCATGCTGATGTATGAGATGCGTGGGAAGAAGGACCGATATGATGTCATAGACCTGGACCCCTACGGAAGCCCCGCCCCTTTCCTGGATGCCGCCGTCCAGGCTGTCGGTGAAGGAGgtcTGTTGTGTGTGACGTGTACTGACATGGCTGTGATGGCTGGTAACAGTGGGGAGACCTGCTACAGCAAATACGGCTCTGTCTCCATCAAAGCCAAGTACTGTCATGAGATGgCTCTGCGTATCATCCTACACAGTCTGGACCAGAGAGCTGGTGTGTACCAACGGTACATCCACCCCctgctctgtgtcagtgtggaCTTCTACATACGAGTGTATGTCAGGGTACACACTGGACAGGCCATGGTCAAAAACTCAGCaagTAAACAAGCGTTGGTGTATAACTGTGTTGGCTGTGGCTCGTTCCACTTACAACGACTGGGCAAGAGGACGACTCAGGGAAACCATATAAAGTACTCTGCAGCCACTGGACCGCCGGTCGGAGCAGAGTGTGAACACTGTGGACACAGACACcagctGGGTGGTCCTATCTGGGGTGAGGCCCTCCATGACGTGAGCTTCGTTCAGAAGGTTCTATCTGCCGTCTCTGGGAACCCGTCCCGCTTTGGAACCGCCCGCCGCATAGAGGGCATGCTCAGCATGGTCACAGAGGAGCTGGAGGATGTGCCTCTATACTACACAGTGGACAACCTGAGCAGCACTGTACACTGCAGCACTCCCCCTCTGCTCCAATTCAGgtcGGCTCTGCTTCATGCAGGCCAcagggtgtccttgtctcatgcCTGTAAGAATGCTCTAAAGACGGACGCTCCTCCCAGGGTCCTCTGGGACGTCATGCGATGCTGGGAAAAGTCCAATCCtgtgaagagagacagactgtcagAGAGCAGCCCTGCTCACCACATCCTCAATACTGAACCCATtctacaggCGTGTTTTGATGTGAGGGAGGATGCCAATCCCCAGTCTCGCCGTCGCCACCTCACCCGCTTCCAGGAGAACCCTGAGCCTTTCTGGGGGCCCAAGGCCCGCGCCAATGCTGGtggtgGAGGTATCTCATCAGAcctggaggacaggaggaaacAGGGTCAAAACAAGAGGAAGAACCAGATCACTGACGCCACCCAGCTTAAGAGCTTCCCCTGCAAGAGGTTCAGGAAGgggaaATGCACACACGGTGAAAAATGCTGTTACTCCCATGACCTGGAACAGACTGACCAAATGGAGTGATTccttcctctcttttcttccctcccACTTGGTATCCTCATGTCCAGCTCAGCAGAATCTGTCCACTAAGGTATACTGGACACAATCATGACGAAGCAACCAGGTGAAACTCCAGGCCCCTGACATAACTAACTTTGAACTCCGGTTATGACTCCGGGGTGACGTTTCCCCCTTGGTACAAATCtaagatcagcttcccctcccccaatcctctACATTACCATTAGTGGGGagaatgcaaaactgacccaataTCAGCATCTATGGGCAACTTCATTATGGGATGTCTAGTTAGCCCTGTATTGGAAATACACATACTGGCTTCATACTGAAGTGAAGCATCAATTCTGTTTTATTTATGACTGTTGTGACAGTCTAATAAAAGTCTTCATGACAAA
>XM_036942320.1
GACAGCCCAGTTGACTGGTGATTCAGAGTGGAGATCGACGGGAAGCCGCCGGTAACGCTTAAATCTCCTCCCCGGTTGGATTCAGAGCTCGCTGCGGGTGCTGAATGTGCTATTTTCGTATGTCTAGACTTCTCAGGACTGAGAAGTGCCCTATGCTGATCATCACTGCTCGGCTACTCCCCCTCTTAACTGTACCCTTCACCCACCAGAGGATTCTAAGGACAGTTGTTGCCTACAGGGGACTGAGAACCATGGAGCCCCTCAGGGCCCCTCAGGATCCACAAGTTAACACCACCCTGTCTGGGGTAGACACCAAGCCTCAGCCCCCTACTTCTGGAGCCCCAATGGAGGGCTTGAACCCAAGTCCAGCTGCCTCAACACCTGACCAGGAGATGCCCCCGACAACAGGGTTGTTGCCAGGGGAGACAGTTGTCAGGGAGGGCAAGGCAGCCATATTGTTTCCCAGTGCCAACGAGGTGTTTTACAACCCTGTGCAGGAGTTCAACAGAGATCTGACGTGTGCGGTGGTTACAGAGTTTGCCCGGGAGCAGATGGCCCGGAGGGGGGTGAAGGTGGTAGTgccaggggagaaggagagggtggtGGTCAATCTAGCTGACgagaagaaagaggagacagagatgcagacaggggaggaaggaggagaggagccagtCGTAACTGCTTCAGTGGGGGAGTGCTGTAAGAATGGTCTGCGTGTGTTGGAGGGTCTGGCAGCGTCTGGCCTACGCTCTGTGAGGTTTGCTCTGGAGGTGCCTGGTCTACGTAGCGTCACGGCTAACGACTTCTCAGCCAAGGCTGCTGCCCTCATCGCCCGCAATGCCCAGCACAACGGAGTCACACACCTACTGCAGGCCAGCCAGAGAGATGCCAGCATGCTGATGTATGAGATGCGTGGGAAGAAGGACCGATATGATGTCATAGACCTGGACCCCTACGGAAGCCCCGCCCCTTTCCTGGATGCCGCCGTCCAGGCTGTCGGTGAAGGAGgtcTGTTGTGTGTGACGTGTACTGACATGGCTGTGATGGCTGGTAACAGTGGGGAGACCTGCTACAGCAAATACGGCTCTGTCTCCATCAAAGCCAAGTACTGTCATGAGATGgCTCTGCGTATCATCCTACACAGTCTGGACCAGAGAGCTGGTGTGTACCAACGGTACATCCACCCCctgctctgtgtcagtgtggaCTTCTACATACGAGTGTATGTCAGGGTACACACTGGACAGGCCATGGTCAAAAACTCAGCaagTAAACAAGCGTTGGTGTATAACTGTGTTGGCTGTGGCTCGTTCCACTTACAACGACTGGGCAAGAGGACGACTCAGGGAAACCATATAAAGTACTCTGCAGCCACTGGACCGCCGGTCGGAGCAGAGTGTGAACACTGTGGACACAGACACcagctGGGTGGTCCTATCTGGGGTGAGGCCCTCCATGACGTGAGCTTCGTTCAGAAGGTTCTATCTGCCGTCTCTGGGAACCCGTCCCGCTTTGGAACCGCCCGCCGCATAGAGGGCATGCTCAGCATGGTCACAGAGGAGCTGGAGGATGTGCCTCTATACTACACAGTGGACAACCTGAGCAGCACTGTACACTGCAGCACTCCCCCTCTGCTCCAATTCAGgtcGGCTCTGCTTCATGCAGGCCAcagggtgtccttgtctcatgcCTGTAAGAATGCTCTAAAGACGGACGCTCCTCCCAGGGTCCTCTGGGACGTCATGCGATGCTGGGAAAAGTCCAATCCtgtgaagagagacagactgtcagAGAGCAGCCCTGCTCACCACATCCTCAATACTGAACCCATtctacaggCGTGTTTTGATGTGAGGGAGGATGCCAATCCCCAGTCTCGCCGTCGCCACCTCACCCGCTTCCAGGAGAACCCTGAGCCTTTCTGGGGGCCCAAGGCCCGCGCCAATGCTGGtggtgGAGGTATCTCATCAGAcctggaggacaggaggaaacAGGGTCAAAACAAGAGGAAGAACCAGATCACTGACGCCACCCAGCTTAAGAGCTTCCCCTGCAAGAGGTTCAGGAAGgggaaATGCACACACGGTGAAAAATGCTGTTACTCCCATGACCTGGAACAGACTGACCAAATGGAGTGATTccttcctctcttttcttccctcccACTTGGTATCCTCATGTCCAGCTCAGCAGAATCTGTCCACTAAGGTATACTGGACACAATCATGACGAAGCAACCAGGTGAAACTCCAGGCCCCTGACATAACTAACTTTGAACTCCGGTTATGACTCCGGGGTGACGTTTCCCCCTTGGTACAAATCtaagatcagcttcccctcccccaatcctctACATTACCATTAGTGGGGagaatgcaaaactgacccaataTCAGCATCTATGGGCAACTTCATTATGGGATGTCTAGTTAGCCCTGTATTGGAAATACACATACTGGCTTCATACTGAAGTGAAGCATCAATTCTGTTTTATTTATGACTGTTGTGACAGTCTAATAAAAGTCTTCATGACAAA
>XM_036942322.1
GACAGCCCAGTTGACTGGTGATTCAGAGTGGAGATCGACGGGAAGCCGCCGGTAACGCTTAAATCTCCTCCCCGGTTGGATTCAGAGCTCGCTGCGGGTGCTGAATGTGCTATTTTCGTATGTCTAGACTTCTCAGGACTGAGAAGTGCCCTATGCTGATCATCACTGCTCGGCTACTCCCCCTCTTAACTGTACCCTTCACCCACCAGAGGATTCTAAGGACAGTTGTTGCCTACAGGGGACTGAGAACCATGGAGCCCCTCAGGGCCCCTCAGGATCCACAAGTTAACACCACCCTGTCTGGGGTAGACACCAAGCCTCAGCCCCCTACTTCTGGAGCCCCAATGGAGGGCTTGAACCCAAGTCCAGCTGCCTCAACACCTGACCAGGAGATGCCCCCGACAACAGGGTTGTTGCCAGGGGAGACAGTTGTCAGGGAGGGCAAGGCAGCCATATTGTTTCCCAGTGCCAACGAGGTGTTTTACAACCCTGTGCAGGAGTTCAACAGAGATCTGACGTGTGCGGTGGTTACAGAGTTTGCCCGGGAGCAGATGGCCCGGAGGGGGGTGAAGGTGGTAGTgccaggggagaaggagagggtggtGGTCAATCTAGCTGACgagaagaaagaggagacagagatgcagacaggggaggaaggaggagaggagccagtCGTAACTGCTTCAGTGGGGGAGTGCTGTAAGAATGGTCTGCGTGTGTTGGAGGGTCTGGCAGCGTCTGGCCTACGCTCTGTGAGGTTTGCTCTGGAGGTGCCTGGTCTACGTAGCGTCACGGCTAACGACTTCTCAGCCAAGGCTGCTGCCCTCATCGCCCGCAATGCCCAGCACAACGGAGTCACACACCTACTGCAGGCCAGCCAGAGAGATGCCAGCATGCTGATGTATGAGATGCGTGGGAAGAAGGACCGATATGATGTCATAGACCTGGACCCCTACGGAAGCCCCGCCCCTTTCCTGGATGCCGCCGTCCAGGCTGTCGGTGAAGGAGgtcTGTTGTGTGTGACGTGTACTGACATGGCTGTGATGGCTGGTAACAGTGGGGAGACCTGCTACAGCAAATACGGCTCTGTCTCCATCAAAGCCAAGTACTGTCATGAGATGgCTCTGCGTATCATCCTACACAGTCTGGACCAGAGAGCTGGTGTGTACCAACGGTACATCCACCCCctgctctgtgtcagtgtggaCTTCTACATACGAGTGTATGTCAGGGTACACACTGGACAGGCCATGGTCAAAAACTCAGCaagTAAACAAGCGTTGGTGTATAACTGTGTTGGCTGTGGCTCGTTCCACTTACAACGACTGGGCAAGAGGACGACTCAGGGAAACCATATAAAGTACTCTGCAGCCACTGGACCGCCGGTCGGAGCAGAGTGTGAACACTGTGGACACAGACACcagctGGGTGGTCCTATCTGGGGTGAGGCCCTCCATGACGTGAGCTTCGTTCAGAAGGTTCTATCTGCCGTCTCTGGGAACCCGTCCCGCTTTGGAACCGCCCGCCGCATAGAGGGCATGCTCAGCATGGTCACAGAGGAGCTGGAGGATGTGCCTCTATACTACACAGTGGACAACCTGAGCAGCACTGTACACTGCAGCACTCCCCCTCTGCTCCAATTCAGgtcGGCTCTGCTTCATGCAGGCCAcagggtgtccttgtctcatgcCTGTAAGAATGCTCTAAAGACGGACGCTCCTCCCAGGGTCCTCTGGGACGTCATGCGATGCTGGGAAAAGTCCCATTCCGGGTGTAGATATGACGGTATGTGGTGGTTATGTTGTATCCTGTAGGAAAAGTCCCATTCA

Function

symbol description
trmt1 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including head; immature eye; mesoderm; midbrain; and neural plate. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TRMT1 (tRNA methyltransferase 1).

NR:

description
tRNA (guanine(26)-N(2))-dimethyltransferase

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942321.1 False 2605 mRNA 0.53 16 10697026 10712363
XM_036942320.1 False 2539 mRNA 0.54 16 10697026 10717367
XM_036942322.1 True 1832 mRNA 0.56 13 10702791 10717367

Neighbor

gene id symbol gene type direction distance location
LOC110487259 LOC106593718 coding downstream 39694 10634149 ~ 10657332 (-)
LOC110516362 LOC106590757 coding downstream 374843 10313723 ~ 10322183 (-)
lgals2b LOC106590712 coding downstream 594471 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 622405 10015869 ~ 10074621 (-)
LOC118938202 LOC106592503 coding downstream 997554 9695450 ~ 9699472 (-)
LOC110487189 LOC106590640 coding upstream 23438 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 62974 10780341 ~ 10913542 (-)
LOC118938429 NA coding upstream 264315 10981682 ~ 11101213 (-)
LOC118938431 LOC106564445 coding upstream 390179 11107546 ~ 11110630 (-)
LOC110485570 LOC106590535 coding upstream 397768 11115135 ~ 11116092 (-)
G1142801 NA non-coding downstream 7836 10688162 ~ 10689190 (-)
G1142800 LOC106593677 non-coding downstream 14865 10680396 ~ 10682161 (-)
G1142797 NA non-coding downstream 21485 10673301 ~ 10675541 (-)
G1142798 LOC106593677 non-coding downstream 24046 10671988 ~ 10672980 (-)
G1142506 NA non-coding downstream 25170 10670770 ~ 10671856 (-)
G1142513 NA non-coding upstream 14739 10732106 ~ 10732517 (-)
G1142510 NA non-coding upstream 15738 10733105 ~ 10733554 (-)
G1142502 NA non-coding upstream 16545 10733912 ~ 10738270 (-)
G1142500 NA non-coding upstream 22135 10739502 ~ 10740062 (-)
G1142757 NA other downstream 130561 10564460 ~ 10566465 (-)
G1142620 NA other downstream 397659 10295744 ~ 10299367 (-)
G1142121 NA other downstream 714760 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 1027844 9666379 ~ 9669182 (-)
G1143380 NA other upstream 440519 11157886 ~ 11159261 (-)
G1143449 NA other upstream 563695 11281062 ~ 11282092 (-)
LOC110485554 LOC106590435 other upstream 710323 11425756 ~ 11429422 (-)
LOC118938427 LOC106564452 other upstream 738207 11447021 ~ 11494371 (-)

Expression


Co-expression Network