LOC110485564 (LOC106564523)


Basic Information

Item Value
gene id LOC110485564
gene name LOC106564523
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11213935 ~ 11215900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942589.1
GCCATTGTACAAAGTACAGATTCCTAGACGAGACGTCAAAAACCTGTCAGTACTTGAGAACTGCTGGTGAAAGGTAGTTGAAGGGGCATTTGAAGTGAATGTGGTTTGGCTGATTCAATATGAAAAACCCATCTGAACGTACATTGGTTGTCATCGGCAACCCTGGAGCTATATCATGGGCTGCCCTGGAAGGAGGCGAAGAGAAGCCCCTGGGGACCACCAGAGTCTGGGTTACTACAGGCACCATCTCAGGACGCCCCCTCTCTGTGGTAAACATGCCTGGTGCAGTAACCACCACCCAGAGCCAGGGGGCGCTACAGGACTGGGCTCTGGAGTGTCTGTCGCTGTCTGAGTGTTCCAAGGGGATCCACTCTTTCCTCCTGGTGGCGCCGTTGGGTCATCTCACAGAGCAGGAGAGAAGAGGGGCTCAATGCATCCGAAGGATGTTCGGAGAGAAGGCCCATGGCTTCACTCAAGTCCTCTTCACCTACGAGCTGGAGCAGAAGGATAGTCTTGAGGAtctactgaaggagagagaggcccAGAGGCTGGTTGAGGAGTGCGGGGGACGTTTTCACGTCTGCCCAAAGAGCATTGGTGAAGAGCTGGAAGTCACAGGGTTACTGGGAAAGGTCGACTCCATTTTGGATCAGGGAACAGACCGCTGCTACACCGTGGAGATGCACCAAGAAGCTCAACCGCTATTGGTGGAGTTTAGGGAGCAGCTTAAGGGCCTATTGGATGGCTTTATCAGACTTAAGGAAATTATCAATGAAAGGGAGAGAATGCAAGTGAATGTGGAGAATTTGGAACACAGGATCTTCAGAGAGAAGCTAGCGAGGCTTCAAGATGAGCTCTTGTTGAAGcagatggagaaagaaagagacagtggCATGGAGGTCGAGGCGATGAGCTTTATATATGAGTTGGACAGGTTAGTTGACAAGCTTGCCCTAAAAAGAGTGAGAGCAGTCGAGGAGGACCATAAGAGCAGAGACGACGTGCAGAGGTTTAGGGAGGAGTTGGGGAGGATGGTGGATGAAATGGTTACCAATCAGAAACACAAGCATAGACAGATGTGTCgggagaagggagaagaagaGTGGGAGCTTCAGAACTTCAGGGAACAGCTagaaagactgaaaaacaacatgaaaaagacagagaagagagggaacaggaaagagaaggaaggagTTTGTGAAGGGGGcaggaaagagaagggagggaaggagtttGTGAAGGGGGCAGGaaagggggatgagggagagagagattccagAGGGAAGCACGGAGGGAGGGTTTGA

Function

NR:

description
uncharacterized protein LOC110485564

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942589.1 True 1307 mRNA 0.51 3 11213935 11215900
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938428 LOC106590378 coding upstream 32947 11171376 ~ 11180988 (+)
LOC110514149 LOC106592053 coding upstream 56745 11128608 ~ 11157190 (+)
LOC110485568 LOC106564447 coding upstream 85681 11123005 ~ 11128254 (+)
LOC110485569 morg1 coding upstream 99140 11110690 ~ 11114795 (+)
LOC118938430 ier2 coding upstream 444561 10767708 ~ 10769374 (+)
LOC110485562 LOC106590570 coding downstream 769 11216669 ~ 11273353 (+)
LOC110485548 LOC106590423 coding downstream 280617 11496517 ~ 11505553 (+)
LOC110485547 LOC106590279 coding downstream 299658 11515558 ~ 11536902 (+)
LOC118938426 LOC106590289 coding downstream 326477 11542377 ~ 11617405 (+)
LOC110513526 LOC106590442 coding downstream 397386 11613286 ~ 11695318 (+)
G1142959 NA non-coding upstream 32113 11181615 ~ 11181822 (+)
G1142941 NA non-coding upstream 145768 11067946 ~ 11068167 (+)
G1142911 NA non-coding upstream 166885 11044175 ~ 11047050 (+)
G1142897 NA non-coding upstream 201190 11006917 ~ 11012745 (+)
G1142450 NA non-coding upstream 334999 10878700 ~ 10878936 (+)
G1142969 NA non-coding downstream 20444 11236344 ~ 11238188 (+)
G1142974 NA non-coding downstream 25875 11241775 ~ 11242075 (+)
G1142975 NA non-coding downstream 26977 11242877 ~ 11243158 (+)
G1142977 NA non-coding downstream 29025 11244925 ~ 11245489 (+)
G1142978 NA non-coding downstream 29658 11245558 ~ 11245764 (+)
G1142964 NA other upstream 8692 11204895 ~ 11205243 (+)
G1142457 NA other upstream 316962 10895925 ~ 10896973 (+)
G1142381 NA other upstream 390680 10819740 ~ 10823255 (+)
G1142240 NA other upstream 914571 10296253 ~ 10299364 (+)
G1142146 NA other upstream 1187701 10026017 ~ 10026234 (+)
G1143059 LOC106564453 other downstream 216838 11432738 ~ 11435550 (+)
LOC110517576 LOC106589789 other downstream 489697 11696226 ~ 11706270 (+)
G1143104 NA other downstream 582014 11797914 ~ 11801442 (+)
G1143255 NA other downstream 692137 11908037 ~ 11908661 (+)

Expression

LOC110485564(LOC106564523) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110485564(LOC106564523) Expression in each Bioproject

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LOC110485564(LOC106564523) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
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Co-expression Network