LOC118938427 (LOC106564452)


Basic Information

Item Value
gene id LOC118938427
gene name LOC106564452
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11447021 ~ 11494371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942335.1
GAGTGGTGGTGGCTGCTTGGGGGAATAGGGGCTGGACTGGGTCTTGGTCTGTCTACGTACACAGCAGACGACCACGGGGAGGCTGGAACCACACAGTCACGTCTCCTGCTGAGGGGTGTAGCcggaaaaaaaagagaaagagagagagagaatagaaagacagagagccaCGCACGGCTCAGCTGAGGCAAGCAAACGATTGGAGTAGAAATCGTGAGAGACAACCGCTGGAAGCGAAcagtggaagggaggaaggaaagagaaaaCAGACAGGACCCAAATCTGCCAGcgaccaccacctcctctccatCTCGATGGTTAGCTGCGCACCCACATAGACCGATGACACCCCCCGCCCTCTTCTAAAAAGACAACTAGGGGGGATGACCGCCTACCGAGAAGGCAGTTGACTAGCGTCGTAACTAAGCGATGCACCTTCTTTCCAAGAGCGCAAGCTTGAAGCTATCTTTTATCCTAACATAGGCTATTTGACGAATGTCAGTGTTGACATTATTTCCTAACAGTGTTGTGGTTATTGACAACGAGGCTCGGTTTGTTTTCGAGACTCTGTAAAGCAAAGTTATTTTTCTGCTGGACTTGTTTTTTTTCAGTGCGTCCTGGATTTCCATACTTGCAGAAAAACAGATGATTATTTTTGCGACAAGCTAGGCCTATTTGTAAAGAAATATAGCAGTAGAACGAACGGACTCCTTTGGCCACCCTTCTGTAGCCTATCAACCGTTTGAAACGGATGTGTGCACATCAAGAAGATACTGAGAAGTGACAGTAGAGGAGACATCCAACGAGGAGAGCCGACAAGGATACTTACTATACGTTCGCGTCCAGTGGAGACAAGGCTTTTATAAaagTTGCCATGGTATCATTGGACGAGCCTCTGGACCTGAAGCTTCCACAGGCCAATGGGAGGGTCAGGTTGGGAAAGAGGGCATGCTCGGCCTCCATCTGCGCCCCCCTCAGTGCCACACGACAACGTCTGCTACGTAACCTACCGATGACCTacccctcaccacctccctctccagGTACCCCCCTGTACCACCAGGAGAGGGTAGGTTCCTGCACCCCCCCTGCCATGGACCTgagtctctccccctccttccgaCACgcaccctccccctctccctcctcctcctcccgccaTGCACCCTCCCCCTCTGCCTCACCCTCCTCACCCCTGGACTACCCACCCAGCTGCAGCCCAGCCACACCCATCTACTCCAGGgaaGCAGCTCTCCCTCGTTACCTGGAAGGCGATGCTTCTCCGCAGGGCTTCCAGATCTTCCTGCCAATCGGGACCACAGGGGGCGGGTTCAACCTGCCCTCCTCCATGTTCATTGGTCAGCCCGGGGAGAAGAGGGCGTCACCCGATCCCTCATCGAACGAGCAGCTGGCCTGCCATTGGATGAAGtgCCACCTGCTGTTTGACTCGTTACAGGACCTGGTGGATCACATCAATGACTACCATGTCAAACCTGAAAAGGATTCTGGGTACTGCTGCCACTGGGAGGGCTGTGCCCGCAACGGGAGGGGATTCAACGCCAGGTACAAGATGTTGATCCACATCAGGACCCACACCAATGAGAAGCCTCACCACTGTCCCACCTGCAACAAGAGCTTTTCTCGCCTGGAGAACCTCAAgatacacacacgctcacacacaggAGAGAAGCCGTACATCTGTCCGTACGAGGGCTGCAGCAAGCGCTACTCCAACTCCAGCGACCGCTTCAAGCACACGCGCACCCACTACGTGGACAAGCCCTACTACTGCAAGATGGCTGGCTGCCTTAAACGCTACACCGACCCCAGCTCCCTCCGCAAACACATCAAGGCCCACGGACACTTCGTCGCGACCCAGGAACAGGCCTCCTCAGCCGGGCTTGGGGTGTTCCTCAAAGGGGGTGGTCTCCACGGAGGTAACAGTGGAGGGGTCTCAGAGATGGGCTATGTCGGCGGGGCCCATATTATCATCCCAGGAGGGGCCGCCATGGCTTCTCTCCTAGGGGGCCACCATCTAGGGGCCTCGCTGCCTCTCTCGGCCATGTGTGGCCCTCTGGATCTCAGCAGACTAGGTCACCCTGGAGCCTCCTTGTTCTCACTAGGTAGTGGAGGTGGGGGATTGGGTTGGTGTGATTCCTCCCTGCTCCCGTTTGGACTCTCGACTGCATCCGTGTTTGGGTTGGCTTCCATGGGTCTGGGGCGGCtagggagaggggagagcaggagggagggggaggaggaggacggatgtgaagaggagagggaggatgaggtATTGAATTTGTCTGCGGGAGGGTACGGAGGGACAGGGGCGGGGCGGGACCTCCCCTCCTGGGTGGTGATTCAATCCCCTGGGGCACTGGTGCTCAAACCAGCTGTTGTCAGCTAgggccagggtgtgtgtgtgctcagcttGGGACACGTGCTCACACACCTGTTGCTACGATCAagggacagggtgtgtgtgtaagtttgtgtgtgtgtgtttgtgcctaaACAATGCCTCGGAGCTGAAagttggtgtgtgtggagggggagggttAGGTGCTTTATAAAAGCTGTGTGGGGGTCAAAGGTAATTCTCCTTTTCAGACATGAAAAAACTCATTTCAACACAAAACAGTAACAGCTGGCTGAAGAAAACAACAAGAAAACTATGGAAATGTACCTCAAACATTCCCTATGGACTTTTCCCAATGGACTTTTCCCAATGGACATCCCTAATTGACATTCCCAAATGATTTGTGTGGCAACACAGTTGGATTTATGTAATCGCCATTATGATGTAAAGAAGAAGCAGCAGTTATTGAGAGAATTGAGGTAATATGCTCCTGTGTGTTTTGTTAGTCATCATTTGTATGCAGCACAGACCCTATGGACTATAACCGATAACAGCTACTGTTAGTCTGGATAGTCACTATAACAGTGGGTTTTATATCAGTGTCTTTAACTATTATGGCCaccagggggaggtagagagtcAGGTAAATTTTGTCTAATCTTTCTAGCCTCACATCAGAACTGAATTGTTCTGTGTGGACGTTGTCTGTAGCCACAGATCTTGGGTCAGCGTACCATCCTTAACCATTAGAAGATGcgaaactgaccttagatcagtgtctagggccAACTTtattctccttcctccccctctactcAGTCTCTAGACTCACAACAACAAACAGCCTTTAAAATCCCCTGTAGGGAATAGGCTCCCAAGGTTACAAGGTAGCCAGTGGAAATCTGTGGTACACACACTACAGAGCAAACACAGTCTTGTTGAAGCATGTCGTATGTCAAACTACATTCTACATGCGTCTATGGGGTGGATTCTAACTTCCACTTTAGTCAAACATTGATGACAATGGGAGACTAAGTTCAAATGTAACTGGAAGTTTAGGATTTGcctttgttatatatatatattttttacacaggCAGGGCTAGGGGTAGCCTTCACTCATGTTACCCGGTTACCCTGGGGTCCTCAGCTAAGAATGTGGTATTTAGTTCCATTGTCATGTGACTGCCACCTGCATAGTTGTAAGGTTGGTTGCCAGGACGACAGAGGTGTGGTTTGGCTAAAAAAGGCTATGATGTTTCGCTGACAATGAACCGCACCTTCCTCTCCCCTCAACCAACCTACTTGACCTGCAGTGGCTTCACACACCTAGGCTgcatctgaaatgacaccctatccctgtATAGTATTCCCTAAaaggtagtgcactgtaaagggaatagtgtgccatttcagTCGCATACCTCATGCTTTATGACTGACGATCAAATTCAATAACGTTGAATGAATTAAGCTTAAAATAACCTATATCTTGTATGTTTTTACCCTACAAATGGATCAAATCTGGTGTGGTCCCAACAGCAAACAGCCTTTAAAATCTCCTGTAGGGAATAGGCTCCTGAAGTTACAAGGTAATAAGTGGAAAAAGTTTGTATAGGTATGACATCTCTGTGTCTTTTCATCACTTCTGCAAACAAGTCAAACACGTTTTATTTGTCTTTCTGGTTAAGACGAGACGTTTCTGTTGAATGTTGAagttgttcctctctctatcttatTTTGTCACTTGGTGACAATGGgctcgtcccaaatggcaccctattccctatgtagtgcgctacttttgaccagagccctggtataaaataaaaaaagtagtgcactacatagggaacaggttgTCATTTGGGGCGCACACAAAGACAAGGATCCTGTGTCAGGATCTACAAACCCAACGATGACGCATTAACCCTTTGTGCGACAGACATTTCTCAATAAAGCCGACAAACCTCAGAAAAGTATTATTTGCTAATAGCTCATCCAACTCAAAGGTAGGGATTGGTATTTGATCTGCACAACTTACCTGGCATCCAGTATTATTGGCCAAGTTAGGGATTTCTATTTGATCCAGGTTTTATTGATTAGATAAGTAGACCCAATCTAAACAGAAGTGTGTACATAACTGTGTAGTACTTATAATAGCttcattatttgtatttattcacAGACAAATCACTCAAAATAATACTTAGTCGTTGTTGTAAGTACAATGTAACAACGTGCAACTCGACCATGCCAGTAGAATTTAAATGTAGTTACAAACCAGGAACTGTAAGATTGATTGGGAAAAACCCGAGACTTCAGGTTCCCATATTGAGGTAACACAGAAAGTACAAATAGGACAGAGGTGAATGTACATATGAAGTCTACATATGCACAAAGGGTTAACATGACACTATGGCCTCCCTGTTGCAGGCCAGCATCTGATATCATTTCTTATCCTCGTTTGCACATTAAGATTTGCAATTATTATgatgtatttttttatgtttccAAGTGCCTGGTATGTATCATAAGTGAAATATACTGAAAATACACACAGCACATTCAATGAAGTACAGGTACATGTAATGCAAATGTATAAATGTAGGTATTTGTTCCAAAGGGTCAACGCTTTACATGACTGACTGTTTAGAGTTGACAAAAGGTGTGATTGGTGACATCATAGCATTGTGTGCTTTCAGTTTTTTTTACGAGGACTGTTAAACGGAATGTGTCGTTAATGACGAAGACGTGACGTTAATAAACAAAGACAAACAAATGAAGTGGCA
>TU1304109
CTGGACTGGGTCTTGGTCTGTCTACGTACACAGCAGACGACCACGGGGAGGCTGGAACCACACAGTCACGTCTCCTGCTGAGGGGTGTAGCcggaaaaaaaagagaaagagagagagagaatagaaagacagagagccaCGCACGGCTCAGCTGAGGCAAGCAAACGATTGGAGTAGAAATCGTGAGAGACAACCGCTGGAAGCGAAcagtggaagggaggaaggaaagagaaaaCAGACAGGACCCAAATCTGCCAGcgaccaccacctcctctccatCTCGATGTGCGTCCTGGATTTCCATACTTGCAGAAAAACAGATGATTATTTTTGCGACAAGCTAGGCCTATTTGTAAAGAAATATAGCAGTAGAACGAACGGACTCCTTTGGCCACCCTTCTGTAGCCTATCAACCGTTTGAAACGGATGTGTGCACATCAAGAAGATACTGAGAAGTGACAGTAGAGGAGACATCCAACGAGGAGAGCCGACAAGGATACTTACTATACGTTCGCGTCCAGTGGAGACAAGGCTTTTATAAaagTTGCCATGGTATCATTGGACGAGCCTCTGGACCTGAAGCTTCCACAGGCCAATGGGAGGGTCAGGTTGGGAAAGAGGGCATGCTCGGCCTCCATCTGCGCCCCCCTCAGTGCCACACGACAACGTCTGCTACGTAACCTACCGATGACCTacccctcaccacctccctctccagGTACCCCCCTGTACCACCAGGAGAGGGTAGGTTCCTGCACCCCCCCTGCCATGGACCTgagtctctccccctccttccgaCACgcaccctccccctctccctcctcctcctcccgccaTGCACCCTCCCCCTCTGCCTCACCCTCCTCACCCCTGGACTACCCACCCAGCTGCAGCCCAGCCACACCCATCTACTCCAGGgaaGCAGCTCTCCCTCGTTACCTGGAAGGCGATGCTTCTCCGCAGGGCTTCCAGATCTTCCTGCCAATCGGGACCACAGGGGGCGGGTTCAACCTGCCCTCCTCCATGTTCATTGGTCAGCCCGGGGAGAAGAGGGCGTCACCCGATCCCTCATCGAACGAGCAGCTGGCCTGCCATTGGATGAAGtgCCACCTGCTGTTTGACTCGTTACAGGACCTGGTGGATCACATCAATGACTACCATGTCAAACCTGAAAAGGATTCTGGGTACTGCTGCCACTGGGAGGGCTGTGCCCGCAACGGGAGG

Function

NR:

description
zinc finger protein GLIS2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942335.1 False 5154 mRNA 0.48 8 11447021 11494371
TU1304109 True 1224 TUCP 0.56 7 11455574 11494340

Neighbor

gene id symbol gene type direction distance location
LOC110485550 LOC106564453 coding downstream 369 11434632 ~ 11446652 (-)
LOC110485554 LOC106590435 coding downstream 17599 11425756 ~ 11429422 (-)
LOC110485558 LOC106590506 coding downstream 87880 11323643 ~ 11359141 (-)
LOC118938432 NA coding downstream 213266 11218089 ~ 11233755 (-)
LOC110485570 LOC106590535 coding downstream 330929 11115135 ~ 11116092 (-)
LOC110485537 mcrip2 coding upstream 212203 11706574 ~ 11712341 (-)
LOC110485529 LOC106589785 coding upstream 219087 11713458 ~ 11722106 (-)
LOC110485542 LOC106564456 coding upstream 229355 11723726 ~ 11732449 (-)
LOC118938530 NA coding upstream 241993 11736364 ~ 11737076 (-)
LOC110485539 cxcl12b coding upstream 303531 11797902 ~ 11811263 (-)
G1143485 NA non-coding downstream 57957 11388863 ~ 11389064 (-)
G1143471 NA non-coding downstream 115560 11330886 ~ 11331461 (-)
G1143441 NA non-coding downstream 185481 11261073 ~ 11261540 (-)
G1143437 NA non-coding downstream 199791 11246984 ~ 11247230 (-)
G1143568 NA non-coding upstream 71703 11566074 ~ 11572819 (-)
G1143588 NA non-coding upstream 121427 11615798 ~ 11617512 (-)
G1143643 NA non-coding upstream 252091 11746462 ~ 11749253 (-)
G1143652 NA non-coding upstream 265231 11759602 ~ 11762332 (-)
G1143449 NA other downstream 164929 11281062 ~ 11282092 (-)
G1143380 NA other downstream 287760 11157886 ~ 11159261 (-)
LOC110494931 cacna1a other downstream 624654 10780341 ~ 10913542 (-)
G1142757 NA other downstream 880556 10564460 ~ 10566465 (-)
G1143743 NA other upstream 457224 11951595 ~ 11952568 (-)
G1143771 NA other upstream 548737 12043108 ~ 12081882 (-)
LOC110485629 NA other upstream 864022 12358008 ~ 12366285 (-)
G1144335 LOC106564512 other upstream 1120605 12614976 ~ 12615559 (-)

Expression


Co-expression Network