LOC110485529 (LOC106589785)


Basic Information

Item Value
gene id LOC110485529
gene name LOC106589785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11713458 ~ 11722106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940204.1
AAAGCATAATATTTATTGCGCAAgtcttttacattttattttaaacttTAGGTTCCACAAACCTATTAAAACGAAAAGTGGGAGGTCAAATATGACAGTTATGAGGCAACAATGTTGCTGTTTGATCATGTGAATAGGATGTTGTGAAACTACGCTAACGATTTCAAATGTTGCCACTGAATTATTTTGTGTCTTGCTTCTGCATAGACTGAAGAAGGAATGTCAAGACTATCTTCGGTGGAGTCCCGTGTGCCGATCTGTCACAGTTTGCAGCCAACTTGAACAATATTGAGACGTCTTTCCAAGCTTCGTTGGCCTATTAAGAAATGTTAACTTTATGACAGTGTTAATGCACTGTTGTCTGTCCAACAGCATAGCAGAAGTGTTTTGAACAGTCCACACCGCAGAATTGTGAGTCAGTGACCGTATGGATTCGGCGCAAAAATGCTTCAACTCGGAGACGAAATCGCCCTATTCTCTGTGGTGTTCGCGTTCGTTCTCCTCGGAACACGGAGCCCGATATGGTCCACCGCCCTCACCGCCTGCCTCTATGCCTTTCTGATCATGTTCCGTTTTCCCCAAGTCCCGACCAGCCGGGCGAGACAGGTGCTTCGGCCCGCTAAGAACGCTGCTTCGGGTGGGGTGTCCCTAGTCGCTCACCGGGGTGGAGGGCATGATGCGCCGGAGAATACCATGGCTGCCATCCGGGAGGCACATAAGAACGGGGCGACCGGCGTAGAGCTGGACTTGGAGTTCACATCAGATGGAGTCCCTATTCTGATGCACGATGAGACTGTAGACCGAACCACCAACGGGTCGGGACCCCTCACACAGCTAAGCTTCTCTGGGCTGTGTAAACTGGACGCTGCCGCTAAGCACCGACTCCGTGACAAGTTCCAGGGAGAGAAGGTCCCCACTCTGCAGGAGGCTGTGGAGGAATGCATCAAACTGCAGCTCACCATCTACTTTGATGTCAAAGGTCACCCAGATGAGgcagCGGCAGCCCTAAAGGAGATGTATCGGAAACACCCTGTGCTTTACAACACCAGCATCGTCTGTTCCTTTGAGCCCAAAGTCATCTACAGGATGCGTCAGGCTGACCCGGAAGTGGTGACGGCGCTGACCCACCGGCCATGGAGCCTTAGTCGGTTGGGTGACGGCACGCCGCGCTTCTCGTCGTTATGGAAACACCACTGTATGCAGGTGCTAGACGTGATACTGGACTGGGCCCACCACCACCTGCTCTGGAACCTCTGTGGCGTCTCTGCCTTCCTGGTGCAGAAGAACTTCATATCACTGGACTATGTCCAGTACTGGGCTCAGAGAGGGGTTGAGGTGGTGGGCTGGACAGTCAACACAGTTGAGGAGAAACAATACTACCAGGAGATACTCAACATCAACTACATCACTGACAGCCTACTGGAGAACTGTGATCCTCACTACTGAacagacatcacacacacagaaacctgcacaaaacacacacacacactgaagcgaGTTAAAATCCCATATTGGACACATACGGCTTTAACCCTGTGTTACTTATCTTACTGTGTATTGTATGCCCGAGACACGATACAAATATTCAGTCCAGTACAGAGCCTTCAACTTACAGGGCGACTTCATTTAGTGAACAACATGGCTCCATGTTCACCTATGTACTGTGATAACCAACTCAGGAGTGTACCTACTGCAcagttacattttagtcatttagacaCTTTTATCTAGGGAGATTTACactagtgagtgcatacattttcataatggtcccccgtgggaattgaacccacaaaccctggtgttgcaagccaccatgctctaccaactgagccacacgggaccacaGCTCGTACATATGTCATATTTTGAATCTATGACCATTCCCATTGTCAAGGATCTGTGTAAATATGAACAATTCATTCTCAGACAGTGCAATAATGTGCTTTTCTGAAGGGATAGTCTAACTGGAATaaggaaaagtatgtgggcaTCCAACCAGCTTCCAATGAAATACTAACCTAATAAGATGCATTAACTTGAATGAAATAATCTTTTAGGAATGGAAAAATAAACAAGTATGGATGAAG

Function

NR:

description
glycerophosphodiester phosphodiesterase 1-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K19179 GDE1; glycerophosphoinositol glycerophosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940204.1 True 2093 mRNA 0.48 6 11713458 11722106

Neighbor

gene id symbol gene type direction distance location
LOC110485537 mcrip2 coding downstream 1123 11706574 ~ 11712341 (-)
LOC118938427 LOC106564452 coding downstream 219087 11447021 ~ 11494371 (-)
LOC110485550 LOC106564453 coding downstream 266806 11434632 ~ 11446652 (-)
LOC110485554 LOC106590435 coding downstream 284036 11425756 ~ 11429422 (-)
LOC110485558 LOC106590506 coding downstream 354317 11323643 ~ 11359141 (-)
LOC110485542 LOC106564456 coding upstream 1620 11723726 ~ 11732449 (-)
LOC118938530 NA coding upstream 14258 11736364 ~ 11737076 (-)
LOC110485539 cxcl12b coding upstream 75796 11797902 ~ 11811263 (-)
LOC110485534 LOC106564462 coding upstream 151875 11873981 ~ 11875822 (-)
LOC110487235 xpnpep1 coding upstream 170067 11892173 ~ 11905783 (-)
G1143588 NA non-coding downstream 95946 11615798 ~ 11617512 (-)
G1143568 NA non-coding downstream 140639 11566074 ~ 11572819 (-)
G1143521 NA non-coding downstream 227444 11480392 ~ 11486014 (-)
G1143517 NA non-coding downstream 238928 11473937 ~ 11474530 (-)
G1143643 NA non-coding upstream 24356 11746462 ~ 11749253 (-)
G1143652 NA non-coding upstream 37496 11759602 ~ 11762332 (-)
G1143657 NA non-coding upstream 50941 11773047 ~ 11773540 (-)
G1143682 NA non-coding upstream 109639 11831745 ~ 11832405 (-)
G1143688 NA non-coding upstream 115286 11837392 ~ 11838515 (-)
G1143449 NA other downstream 431366 11281062 ~ 11282092 (-)
G1143380 NA other downstream 554197 11157886 ~ 11159261 (-)
LOC110494931 cacna1a other downstream 891091 10780341 ~ 10913542 (-)
G1143743 NA other upstream 229489 11951595 ~ 11952568 (-)
G1143771 NA other upstream 321002 12043108 ~ 12081882 (-)
LOC110485629 NA other upstream 636287 12358008 ~ 12366285 (-)
G1144335 LOC106564512 other upstream 892870 12614976 ~ 12615559 (-)

Expression


Co-expression Network