LOC110485542 (LOC106564456)


Basic Information

Item Value
gene id LOC110485542
gene name LOC106564456
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11723726 ~ 11732449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940202.1
ATACCGGACGATTTCGCACTGCCCCCCACCTCCACACCCGCTTCTCTAAATGGCTGTGGTTGAGATATAAAGGACTGTTGTGGAGTAAGGACGATGGCATACAGTCTTGTGGTTCCACCTGCATCACATTTTCACACTTCCACACTACAGCGGTAGCTGAGGAGCATGGCCTCCGGTATTCTGAGCCGCCATCTTGCTTCCTCTCTGAGACCCAGCCGTGGGTTGTCTGCTTCAGGACACCGCCATCAACAAACAACCGCTAAAAGAGTTGAGGAAGTTGAGTTTGATGGTCCTTGTATGAAGACGGAGGTTCCAGGTCCCAGATCTAAGATCCTAGCACAACAACTGGAGAGTATTCAGAGTGTTGTCCAGGTGAACTTCTTCTGTGACTATGAGGAGAGTAAAGGCAACTACTTGGTGGACGTGGATGGGAACCGCATGCTGGATGTCTACACCCAGATCGCATCCATACCCATAGGATACAATCACCCGGCACTCACAAAAGTCATGGCGGATCCGAAAAATATGGGAACGTTTGTCAACCGACCAGCTCTTGGGATGATGCCACCAGAGCAATTCTCTGAGAAGCTTGTCAACGGCCTGATGGCAGTGGCACCCAAGGGCTTCAGTCGGGTCCAGACCATGGCCTGTGGATCCTGCTCCAATGAGAACGCCTACAAAGCCATCTTCATCTGGTACAGAAACAAGATGAGAGGAACTCCGGAACCAACTCCAGAGGAAGTCAGAACTAGTGTCATCAACCAGGTTCCTGGCTGCCCTGACCTGACTCTTCTGTCCTTCATGGGCGGATTTCACGGAAGAACTCTGGGCTGTCTGGCCACCACTCACACCAAGGCCATACAGAAGCTAGACGTGCCGTCTTTTGACTGGCCCATCGCCCCCTTCCCCCAGCTGAGGTACCCCCTGGACCAGTTTGAGAGGGAGAACGCACGGGAGGAGGCACGCTGCCTGGAGGAGGCGGAGGACCTGATAGTGAAGTGGAATCAGAAGGGTCGGCACGTGGCGGGGGTGGTGATCGAGCCAATCCAGGCAGAGGGAGGGGATAACCACGCCTCCTTCGACTTCTACAGGAAGCTCAGGGGAATCACCAAGAAGCATGGCTGTGCCTTCCTAGTGGATGAGGTGCAGACAGGGGGTGGGTCTACGGGGAAATTCTGGGCCCACGAGCACTGGGGATTGGACGACCCCGCTGACATCGTCTCCTTCAGCAAGAAGATGCTGACAGGAGGATACTACCAGAAAGATAGCTTTCAGCCTGacaagCCGTTCAGGATCTTCAACACGTGGCTTGGAGACCACACTAAGAACCTGTTGCTGACTGAGGTCATAAAGGTCATCAAGACAGAAAACCTGCTGGACCAGGCCAAGAGGTCAGGCAAGGTCATACTGGAGGGACTCTACGACCTACAGGATAAGTACCCCCACTTGCTCAGTAAAGCGAGGGGCATCGGAACGTTCTGTGCCATCGATGTTAAGGATGAAGACACACgcaacctcctcctcctcaaggCCAGGAATAAGGGTGTGGTTCTAGGGGGCTGTGGAACCCAGTCTATCCGGTTCCGACCAGCTCTGGTGTTCACGGAACACCATGCTCATCTCTTCCTGGATATCTTTAATGACGCAATCGCTGAGCTCAAGTAGAGTCTACACAGGAATCCAATGTGGCCCTGCTCAAACAGACCCATACTGTCAATCTGCAGTGAAGAGGTTGACACTCctccaatcaatcaaatgcatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctaaaactcgaaacggcaagcaatgcagatgtagaagcacggcgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttccggctgtgctgggtggagatgaAGGGTatatggccattaaggccagatggTTCTTCAAGATCTTCATAGACGACCATCAGGGTATACACTCCTGTATATTATTGTACATTATTTCACTCCAACTCTTTTATGAAAATTATTTCCATAAATGACTGTGGGATGATTGATTGCAATGGACTTTCTGAAGGTCAAATAACTGTAGACATTTTCTGCAGAGTGTTTTGTGTACTGTACCTTAAAATAAACCTGTCAAATATG
>XM_036940203.1
TGGTATACCGGACGATTTCGCACTGCCCCCCACCTCCACACCCGCTTCTCTAAATGGCTGTGGTTGAGATATAAAGGACTGTTGTGGAGTAAGGACGATGGCATACAGTCTTGTGGTTCCACCTGCATCACATTTTCACACTTCCACACTACAGCGGTAGCTGAGGAGCATGGCCTCCGGTATTCTGAGCCGCCATCTTGCTTCCTCTCTGAGACCCAGCCGTGGGTTGTCTGCTTCAGGACACCGCCATCAACAAACAACCGCTAAAAGAGTTGAGGAAGTTGAGTTTGATGGTCCTTGTATGAAGACGGAGGTTCCAGGTCCCAGATCTAAGATCCTAGCACAACAACTGGAGAGTATTCAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACTTCTTCTGTGACTATGAGGAGAGTAAAGGCAACTACTTGGTGGACGTGGATGGGAACCGCATGCTGGATGTCTACACCCAGATCGCATCCATACCCATAGGATACAATCACCCGGCACTCACAAAAGTCATGGCGGATCCGAAAAATATGGGAACGTTTGTCAACCGACCAGCTCTTGGGATGATGCCACCAGAGCAATTCTCTGAGAAGCTTGTCAACGGCCTGATGGCAGTGGCACCCAAGGGCTTCAGTCGGGTCCAGACCATGGCCTGTGGATCCTGCTCCAATGAGAACGCCTACAAAGCCATCTTCATCTGGTACAGAAACAAGATGAGAGGAACTCCGGAACCAACTCCAGAGGAAGTCAGAACTAGTGTCATCAACCAGGTTCCTGGCTGCCCTGACCTGACTCTTCTGTCCTTCATGGGCGGATTTCACGGAAGAACTCTGGGCTGTCTGGCCACCACTCACACCAAGGCCATACAGAAGCTAGACGTGCCGTCTTTTGACTGGCCCATCGCCCCCTTCCCCCAGCTGAGGTACCCCCTGGACCAGTTTGAGAGGGAGAACGCACGGGAGGAGGCACGCTGCCTGGAGGAGGCGGAGGACCTGATAGTGAAGTGGAATCAGAAGGGTCGGCACGTGGCGGGGGTGGTGATCGAGCCAATCCAGGCAGAGGGAGGGGATAACCACGCCTCCTTCGACTTCTACAGGAAGCTCAGGGGAATCACCAAGAAGCATGGCTGTGCCTTCCTAGTGGATGAGGTGCAGACAGGGGGTGGGTCTACGGGGAAATTCTGGGCCCACGAGCACTGGGGATTGGACGACCCCGCTGACATCGTCTCCTTCAGCAAGAAGATGCTGACAGGAGGATACTACCAGAAAGATAGCTTTCAGCCTGacaagCCGTTCAGGATCTTCAACACGTGGCTTGGAGACCACACTAAGAACCTGTTGCTGACTGAGGTCATAAAGGTCATCAAGACAGAAAACCTGCTGGACCAGGCCAAGAGGTCAGGCAAGGTCATACTGGAGGGACTCTACGACCTACAGGATAAGTACCCCCACTTGCTCAGTAAAGCGAGGGGCATCGGAACGTTCTGTGCCATCGATGTTAAGGATGAAGACACACgcaacctcctcctcctcaaggCCAGGAATAAGGGTGTGGTTCTAGGGGGCTGTGGAACCCAGTCTATCCGGTTCCGACCAGCTCTGGTGTTCACGGAACACCATGCTCATCTCTTCCTGGATATCTTTAATGACGCAATCGCTGAGCTCAAGTAGAGTCTACACAGGAATCCAATGTGGCCCTGCTCAAACAGACCCATACTGTCAATCTGCAGTGAAGAGGTTGACACTCctccaatcaatcaaatgcatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctaaaactcgaaacggcaagcaatgcagatgtagaagcacggcgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttccggctgtgctgggtggagatgaAGGGTatatggccattaaggccagatggTTCTTCAAGATCTTCATAGACGACCATCAGGGTATACACTCCTGTATATTATTGTACATTATTTCACTCCAACTCTTTTATGAAAATTATTTCCATAAATGACTGTGGGATGATTGATTGCAATGGACTTTCTGAAGGTCAAATAACTGTAGACATTTTCTGCAGAGTGTTTTGTGTACTGTACCTTAAAATAAACCTGTCAAATATG

Function

NR:

description
4-aminobutyrate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0003867 4-aminobutyrate transaminase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940202.1 False 2204 mRNA 0.51 16 11723726 11732445
XM_036940203.1 True 2436 mRNA 0.51 16 11723726 11732449
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Neighbor

gene id symbol gene type direction distance location
LOC110485529 LOC106589785 coding downstream 1620 11713458 ~ 11722106 (-)
LOC110485537 mcrip2 coding downstream 11391 11706574 ~ 11712341 (-)
LOC118938427 LOC106564452 coding downstream 229355 11447021 ~ 11494371 (-)
LOC110485550 LOC106564453 coding downstream 277074 11434632 ~ 11446652 (-)
LOC110485554 LOC106590435 coding downstream 294304 11425756 ~ 11429422 (-)
LOC118938530 NA coding upstream 3915 11736364 ~ 11737076 (-)
LOC110485539 cxcl12b coding upstream 65453 11797902 ~ 11811263 (-)
LOC110485534 LOC106564462 coding upstream 141532 11873981 ~ 11875822 (-)
LOC110487235 xpnpep1 coding upstream 159724 11892173 ~ 11905783 (-)
LOC110485617 LOC106590349 coding upstream 174453 11906902 ~ 11938426 (-)
G1143588 NA non-coding downstream 106214 11615798 ~ 11617512 (-)
G1143568 NA non-coding downstream 150907 11566074 ~ 11572819 (-)
G1143521 NA non-coding downstream 237712 11480392 ~ 11486014 (-)
G1143517 NA non-coding downstream 249196 11473937 ~ 11474530 (-)
G1143643 NA non-coding upstream 14013 11746462 ~ 11749253 (-)
G1143652 NA non-coding upstream 27153 11759602 ~ 11762332 (-)
G1143657 NA non-coding upstream 40598 11773047 ~ 11773540 (-)
G1143682 NA non-coding upstream 99296 11831745 ~ 11832405 (-)
G1143688 NA non-coding upstream 104943 11837392 ~ 11838515 (-)
G1143449 NA other downstream 441634 11281062 ~ 11282092 (-)
G1143380 NA other downstream 564465 11157886 ~ 11159261 (-)
LOC110494931 cacna1a other downstream 901359 10780341 ~ 10913542 (-)
G1143743 NA other upstream 219146 11951595 ~ 11952568 (-)
G1143771 NA other upstream 310659 12043108 ~ 12081882 (-)
LOC110485629 NA other upstream 625944 12358008 ~ 12366285 (-)
G1144335 LOC106564512 other upstream 882527 12614976 ~ 12615559 (-)

Expression

LOC110485542(LOC106564456) Expression in all Baseline Samples

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LOC110485542(LOC106564456) Expression in each Bioproject

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LOC110485542(LOC106564456) Expression in each Sample
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Co-expression Network