LOC110485539 (cxcl12b)


Basic Information

Item Value
gene id LOC110485539
gene name cxcl12b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11797902 ~ 11811263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940207.1
tcagcctccgAGCTTTAACAGTGTGTAGAGAGGAGCTGACAGTCAGTCTACACTGAGCCCTGCTGGATAGTAGCTGTGAGAAGCTGAGCCCTGAGCCTCTTGTAACTCCATCCTACTACATACAGCCCACCATGGATGTCAAAGTACTGGCTGTGTTGGCCCTACTGGCTGTGGCCATGGATGTACCTCCCTCTACGGCTAAGCCCATCAGCCTGGTAGAGAGGTGCTGGTGTCGCTCCACTCTGAACACCGTCCCTCAGAGGAGCATCAGAGAGCTCAAGTTCCTTCACACACCCAACTGccctttccaagtcatTGCCAAGCTGAAGAACAACAGGGAGGTGTGCATTAACCCCGAGACCAAATGGCTGCAGACGTACCTGAAGAATGCCATTAACAAgGTGAAGAAGTCCAGAAGACGTGCTCAGTAAAGGAGACACCATCCTGACCGGCTTGCAGTGCCCCAGTCCCAGGCCagctctcctcctccactactcAGATATGTAACTCTATAGCTACACGTCTCTGCTCTGGAACACTCTGGAACGCTCTGGAACATTCTGGAACGCTTGCAAAACCAGCACTTCACCGCCAGACCGACCATGATgccttgctgctgctgctgtccccCCGCAGCCACCCTGCCCCCCACGCTGCAGATACCTCTCCTCACGCTGTTAGCACCAAGTGCATATACCTAATTATATCGGAATGTGTGAGTACGTGTGTAAAGAGTGTGTGAGCACAGTGTGTTTTATTTGGTGTGGTTGTtcttagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaactgAGTGTGTCTGAACTGAGTGTGTAAGTGTACGTCTGTATATAAAGTATTTTTCCTACTTTTATAAGAGGCAGTAAAGGGACATTTAAAGTTTTTACACCCGGTTCACCGTCTCAAATGTGCTCAGCAAGGGCTTGTGGGTATCACCAGGGGTGGGCTCTGACTGAGGGGTCATAGGATAGGAACAGGAATGAGCCGTCCAATGGCTTGAGCCCACTCTGTAAGAGGCGACCAATCAGGGCTGGTCAAACATTCATAACAGGGGAAATAGATAGTCACCCTTAACTGATCCAAGGTAAGATGTTGTTGAATCCCTGATGGTTAAGTCTAGGATGGTAGGGAAGGAAATcttagatctgtggttaggggcaACTTCTGTGTCAAGCCTTAACAAGCTTTCCAGTCTAGCCAAGACAATGGAGATCCTCAAACGATAACAAAGGACATGCATTGATTCAGGTGTTTCAACTCTGGGGATCAGAAGACATTAGTTTGAACTGATACATATCTTTTCAGGAAGCGAGGCTGTGCACTGAATCACATGGAGTTTCCATTCACCAGAACAGACCAGTGAAGATCCGAATCAGACGATGCGTACAGGCCGGCGGTTTctaacctctcctcggggaccacCAGGCGTTTCACAATTTAGTTGTAGCCCAGAACtaactcacctgattcacctaTTCAAGGCTggttagttgacaagttgaatcaggtgtgctagctgtGGAATAGATCAAATACATGGAACGACTGGGGGACCtcgaggagaggtttgaaaaccCCTGCTGTAATGAAGGGGAAGTTATCTGCTGTAATAAAGGGGAGGTTATCTGCTGTAATACAAGCCGACAGCCTTTATTGGAGGCAGACAATTCTGTATTACAGTTGAGTCCTGTGCCGAACAGGAAAGCCCACACAATTAGAAGTAACTTAAGCAACTCAGCAAAAGCCAAGGGTTGTAAGAACGATGGCCTTGTAGGATAAGATTGTAATGCAAAACAGGGATAAAACTCCATATCAATGCAGCTTTTTATACAGTTTGTGTGAATGTAATGTTGTTCGTTGCTATAGTCTAGGCTGTAAAGGCATTGAATGAGACACCAAGTCATTTTTCAACAACACAAGCGATGTGAAATGAATTCACCTCAATATTCTGGGTATTTACTAACAAATACTGGCGTAAAATAATTGCTGTATTATATTAAGTGTAGTAAGATTCATTACATACATTTCGATACAGGATCACATTGTCGGATTATTGGATTTCACTCATCAATTGCATAGGAGCTCACTTTAGGCCTACTCCATAGTTATAAAccaccacatatcctgaggattTAAAGCCAGTATACGGACACATTAAATACctgttactatactacagtatTGACTATCACATTGAAACTGAATGTTGCTGAGCTGGGGGCGAAATAAAGTTATTCTACTTTGATCGTTGAGCCACTTTAAGACTTTAAGTCTTTTAAATTGGTATTTTTACTGTAATGATTTTTATATGtttgtatattttatatattctaAGATAATGAGATGTAACACAGTATTTGTAAGTACATTTAAGCAGTATTAGATGAAGGCATAACCAGAGAGTACTGTATCCCAACCGCAGTACTACTGTATTATCCAATCAAATTTTTACACATTTATCACTTTTCCAAAAACGTTTATTTGCCAtatcataaaaaaacatgttatGTGTCTATTAACTTCATTTGGTGCAGCTGCAACATGTTGAAGTTAATGTAATGAACATTTATAGTCCCCCAGATTAAATTGTGGCGACAGGTCTAGATTGAACAACAACAGAATATTATAGAGATACAGGGTTCATTGCCATAGTTTTCCCTGATTCACTCCTCCCTTGAGGAGGTTTATTCTAATCAACCAATAATCTGACGGCATTCATCCACTGATGCAAGATGGGCAAATCTAATAAATCTGGAATGTAACGCTACGTACTGAGATACTTTAAAACAAACATTCCTGTTGTCATTAGGATATCTCAGCTCAGGCCGATTCAAATTCAGATTCAGCTCAGGCAGACGTCAATTAATTCTTCATTAGGACCCCTTAGAACACAATGTCGTTGGGATTCTGTTCTATTTCTCCTGACAGCGTTCCACAGAGTTTAAAATATGAAGTGCCAATAGTACCACTGAGCCAAGACAGAGAACAATACATTTAAGTATGAGCCAGGGGACCCACACATGTTTTCAATCAAGCCCCTCCCTCCCAGATATAGCCATTCCTCAATGATGTGGGtttctatactgttttactgttgCCATTGTTTTTCTACTGTCAAAATAGAGCTCCAGGTCCATTCAAATCTCCAGGCATCTTAGTCTGTGAGCTAAGTGCAGGTGTTTTGGTCCAGAGGTTATTAAGTATCTGTATCACATCGTTGTAAGGTTTGTCATAAAGGAAGGGAATTTGGTGATTATTTAAGTGTTTGAGAACCATTCTGTTCAATGCCATGCTACAGTTAGATCCACAACCAAACCAAACAACATGGCTGTTACCATTTTACTTATCATATCTGTTATTTGGACCACATGTGCAAATAAATCATTGCATTAAGCAATAACATCCCAAGTGGAAATGTGTTTTGTCAGAAGTGTATTTGTTCTGTATGGGTGCTCTCCCCAGACAATGTGAATTACATGTTAAAACCTTCAATTCTTTTGAGGCAGCTTACGACACAAGTATCCTTCATCTACGAGGGATTGTTTAATTCAACTCTGTATGTTCACTGTTTGTATAAACCAAGGGGCAATATGATACCGATATGATACTCACCCTCTTTTTCAATAAAcatataaaataaaatcaaa
>TU1304298
GAGCTGACAGTCAGTCTACACTGAGCCCTGCTGGATAGTAGCTGTGAGAAGCTGAGCCCTGAGCCTCTTGTAACTCCATCCTACTACATACAGCCCACCATGGATGTCAAAGTACTGGCTGTGTTGGCCCTACTGGCTGTGGCCATGGATGTACCTCCCTCTACGGCTAAGCCCATCAGCCTGGTAGAGAGGTGCTGGTGTCGCTCCACTCTGAACACCGTCCCTCAGAGGAGCATCAGAGAGCTCAAGTTCCTTCACACACCCAACTGccctttccaagtcatTGCCAAGCTGAAGAACAACAGGGAGGTGTGCATTAACCCCGAGACCAAATGGCTGCAGACGTACCTGAAGAATGCCATTAACAAgGTGAAGAAGTCCAGAAGACGTGCTCAGTAAAGGAGACACCATCCTGACCGGCTTGCAGTGCCCCAGTCCCAGGCCagctctcctcctccactactcAGATATGTAACTCTATAGCTACACGTCTCTGCTCTGGAACACTCTGGAACGCTCTGGAACATTCTGGAACGCTTGCAAAACCAGCACTTCACCGCCAGACCGACCATGATgccttgctgctgctgctgtccccCCGCAGCCACCCTGCCCCCCACGCTGCAGATACCTCTCCTCACGCTGTTAGCACCAAGTGCATATACCTAATTATATCGGAATGTGTGAGTACGTGTGTAAAGAGTGTGTGAGCACAGTGTGTTTTATTTGGTGTGGTTGTtcttagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaactgAGTGTGTCTGAACTGAGTGTGTAAGTGTACGTCTGTATATAAAGTATTTTTCCTACTTTTATAAGAGGCAGTAAAGGGACATTTAAAGTTTTTACACCCGGTTCACCGTCTCAAATGTGCTCAGCAAGGGCTTGTGGGTATCACCAGGGGTGGGCTCTGACTGAGGGGTCATAGGATAGGAACAGGAATGAGCCGTCCAATGGCTTGAGCCCACTCTGTAAGAGGCGACCAATCAGGGCTGGTCAAACATTCATAACAGGGGAAATAGATAGTCACCCTTAACTGAT
>TU1304299
GAGCTGACAGTCAGTCTACACTGAGCCCTGCTGGATAGTAGCTGTGAGAAGCTGAGCCCTGAGCCTCTTGTAACTCCATCCTACTACATACAGCCCACCATGGATGTCAAAGTACTGGCTGTGTTGGCCCTACTGGCTGTGGCCATGGATGTACCTCCCTCTACGGCTAAGCCCATCAGCCTGGTAGAGAGGTGCTGGTGTCGCTCCACTCTGAACACCGTCCCTCAGAGGAGCATCAGAGAGCTCAAGTTCCTTCACACACCCAACTGccctttccaagtcatTGCCAAGCTGAAGAACAACAGGGAGGTGTGCATTAACCCCGAGACCAAATGGCTGCAGACGTACCTGAAGAATGCCATTAACAAgGTGAAGAAGTCCAGAAGACGTGCTCAGTAAAGGAGACACCATCCTGACCGGCTTGCAGTGCCCCAGTCCCAGGCCagctctcctcctccactactcAGATATGTAACTCTATAGCTACACGTCTCTGCTCTGGAACACTCTGGAACGCTCTGGAACATTCTGGAACGCTTGCAAAACCAGCACTTCACCGCCAGACCGACCATGATgccttgctgctgctgctgtccccCCGCAGCCACCCTGCCCCCCACGCTGCAGATACCTCTCCTCACGCTGTTAGCACCAAGTGCATATACCTAATTATATCGGAATGTGTGAGTACGTGTGTAAAGAGTGTGTGAGCACAGTGTGTTTTATTTGGTGTGGTTGTtcttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaactgAGTGTGTCTGAACTGAGTGTGTAAGTGTACGTCTGTATATAAAGTATTTTTCCTACTTTTATAAGAGGCAGTAAAGGGACATTTAAAGTTTTTACACCCGGTTCACCGTCTCAAATGTGCTCAGCAAGGGCTTGTGGGTATCACCAGGGGTGGGCTCTGACTGAGGGGTCATAGGATAGGAACAGGAATGAGCCGTCCAATGGCTTGAGCCCACTCTGTAAGAGGCGACCAATCAGGGCTGGTCAAACATTCATAACAGGGGAAATAGATAGTCACCCTTAACTGAT
>TU1304300
GAGCTGACAGTCAGTCTACACTGAGCCCTGCTGGATAGTAGCTGTGAGAAGCTGAGCCCTGAGCCTCTTGTAACTCCATCCTACTACATACAGCCCACCATGGATGTCAAAGTACTGGCTGTGTTGGCCCTACTGGCTGTGGCCATGGATGTACCTCCCTCTACGGCTAAGCCCATCAGCCTGGTAGAGAGGTGCTGGTGTCGCTCCACTCTGAACACCGTCCCTCAGAGGAGCATCAGAGAGCTCAAGTTCCTTCACACACCCAACTGccctttccaagtcatTGCCAAGCTGAAGAACAACAGGGAGGTGTGCATTAACCCCGAGACCAAATGGCTGCAGACGTACCTGAAGAATGCCATTAACAAgGTGAAGAAGTCCAGAAGACGTGCTCAGTAAAGGAGACACCATCCTGACCGGCTTGCAGTGCCCCAGTCCCAGGCCagctctcctcctccactactcAGATATGTAACTCTATAGCTACACGTCTCTGCTCTGGAACACTCTGGAACGCTCTGGAACATTCTGGAACGCTTGCAAAACCAGCACTTCACCGCCAGACCGACCATGATgccttgctgctgctgctgtccccCCGCAGCCACCCTGCCCCCCACGCTGCAGATACCTCTCCTCACGCTGTTAGCACCAAGTGCATATACCTAATTATATCGGAATGTGTGAGTACGTGTGTAAAGAGTGTGTGAGCACAGTGTGTTTTATTTGGTGTGGTTGTtcttagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaactgAGTGTGTCTGAACTGAGTGTGTAAGTGTACGTCTGTATATAAAGTATTTTTCCTACTTTTATAAGAGGCAGTAAAGGGACATTTAAAGTTTTTACACCCGGTTCACCGTCTCAAATGTGCTCAGCAAGGGCTTGTGGGTATCACCAGGGGTGGGCTCTGACTGAGGGGTCATAGGATAGGAACAGGAATGAGCCGTCCAATGGCTTGAGCCCACTCTGTAAGAGGCGACCAATCAGGGCTGGTCAAACATTCATAACAGGGGAAATAGATAGTCACCCTTAACTGAT

Function

symbol description
cxcl12b Enables chemoattractant activity. Acts upstream of or within with a positive effect on Kupffer's vesicle development. Acts upstream of or within several processes, including blood vessel morphogenesis; induction of positive chemotaxis; and nervous system development. Predicted to be located in extracellular space. Is expressed in several structures, including cardiovascular system; central nervous system; endoderm; head; and mesoderm. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12).

NR:

description
chemokine CXCL12b precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940207.1 False 3765 mRNA 0.42 4 11797902 11811263
TU1304298 False 1067 TUCP 0.51 5 11800470 11811231
TU1304299 False 1083 TUCP 0.51 5 11800470 11811231
TU1304300 True 1165 TUCP 0.51 4 11800470 11811231

Neighbor

gene id symbol gene type direction distance location
LOC118938530 NA coding downstream 60826 11736364 ~ 11737076 (-)
LOC110485542 LOC106564456 coding downstream 65453 11723726 ~ 11732449 (-)
LOC110485529 LOC106589785 coding downstream 75796 11713458 ~ 11722106 (-)
LOC110485537 mcrip2 coding downstream 85567 11706574 ~ 11712341 (-)
LOC118938427 LOC106564452 coding downstream 303531 11447021 ~ 11494371 (-)
LOC110485534 LOC106564462 coding upstream 62718 11873981 ~ 11875822 (-)
LOC110487235 xpnpep1 coding upstream 80910 11892173 ~ 11905783 (-)
LOC110485617 LOC106590349 coding upstream 95639 11906902 ~ 11938426 (-)
LOC110485629 NA coding upstream 547590 12358008 ~ 12366285 (-)
LOC110487266 NA coding upstream 604754 12416017 ~ 12448563 (-)
G1143657 NA non-coding downstream 24362 11773047 ~ 11773540 (-)
G1143652 NA non-coding downstream 35570 11759602 ~ 11762332 (-)
G1143643 NA non-coding downstream 48649 11746462 ~ 11749253 (-)
G1143588 NA non-coding downstream 180390 11615798 ~ 11617512 (-)
G1143682 NA non-coding upstream 20482 11831745 ~ 11832405 (-)
G1143688 NA non-coding upstream 26129 11837392 ~ 11838515 (-)
G1143729 NA non-coding upstream 121819 11933082 ~ 11933581 (-)
G1143767 NA non-coding upstream 185659 11996922 ~ 11998113 (-)
G1143785 NA non-coding upstream 209867 12021130 ~ 12032311 (-)
LOC110485554 LOC106590435 other downstream 368537 11425756 ~ 11429422 (-)
G1143449 NA other downstream 515810 11281062 ~ 11282092 (-)
G1143380 NA other downstream 638641 11157886 ~ 11159261 (-)
LOC110494931 cacna1a other downstream 975535 10780341 ~ 10913542 (-)
G1143743 NA other upstream 140332 11951595 ~ 11952568 (-)
G1143771 NA other upstream 231845 12043108 ~ 12081882 (-)
G1144335 LOC106564512 other upstream 803713 12614976 ~ 12615559 (-)
G1144338 NA other upstream 806696 12617959 ~ 12618158 (-)

Expression


Co-expression Network