Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485539 |
| gene name | cxcl12b |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 11797902 ~ 11811263 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cxcl12b | Enables chemoattractant activity. Acts upstream of or within with a positive effect on Kupffer's vesicle development. Acts upstream of or within several processes, including blood vessel morphogenesis; induction of positive chemotaxis; and nervous system development. Predicted to be located in extracellular space. Is expressed in several structures, including cardiovascular system; central nervous system; endoderm; head; and mesoderm. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12). |
| description |
|---|
| chemokine CXCL12b precursor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036940207.1 | False | 3765 | mRNA | 0.42 | 4 | 11797902 | 11811263 |
| TU1304298 | False | 1067 | TUCP | 0.51 | 5 | 11800470 | 11811231 |
| TU1304299 | False | 1083 | TUCP | 0.51 | 5 | 11800470 | 11811231 |
| TU1304300 | True | 1165 | TUCP | 0.51 | 4 | 11800470 | 11811231 |
11,786,000
11,788,000
11,790,000
11,792,000
11,794,000
11,796,000
11,798,000
11,800,000
11,802,000
11,804,000
11,806,000
11,808,000
11,810,000
11,812,000
11,814,000
11,816,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938530 | NA | coding | downstream | 60826 | 11736364 ~ 11737076 (-) |
| LOC110485542 | LOC106564456 | coding | downstream | 65453 | 11723726 ~ 11732449 (-) |
| LOC110485529 | LOC106589785 | coding | downstream | 75796 | 11713458 ~ 11722106 (-) |
| LOC110485537 | mcrip2 | coding | downstream | 85567 | 11706574 ~ 11712341 (-) |
| LOC118938427 | LOC106564452 | coding | downstream | 303531 | 11447021 ~ 11494371 (-) |
| LOC110485534 | LOC106564462 | coding | upstream | 62718 | 11873981 ~ 11875822 (-) |
| LOC110487235 | xpnpep1 | coding | upstream | 80910 | 11892173 ~ 11905783 (-) |
| LOC110485617 | LOC106590349 | coding | upstream | 95639 | 11906902 ~ 11938426 (-) |
| LOC110485629 | NA | coding | upstream | 547590 | 12358008 ~ 12366285 (-) |
| LOC110487266 | NA | coding | upstream | 604754 | 12416017 ~ 12448563 (-) |
| G1143657 | NA | non-coding | downstream | 24362 | 11773047 ~ 11773540 (-) |
| G1143652 | NA | non-coding | downstream | 35570 | 11759602 ~ 11762332 (-) |
| G1143643 | NA | non-coding | downstream | 48649 | 11746462 ~ 11749253 (-) |
| G1143588 | NA | non-coding | downstream | 180390 | 11615798 ~ 11617512 (-) |
| G1143682 | NA | non-coding | upstream | 20482 | 11831745 ~ 11832405 (-) |
| G1143688 | NA | non-coding | upstream | 26129 | 11837392 ~ 11838515 (-) |
| G1143729 | NA | non-coding | upstream | 121819 | 11933082 ~ 11933581 (-) |
| G1143767 | NA | non-coding | upstream | 185659 | 11996922 ~ 11998113 (-) |
| G1143785 | NA | non-coding | upstream | 209867 | 12021130 ~ 12032311 (-) |
| LOC110485554 | LOC106590435 | other | downstream | 368537 | 11425756 ~ 11429422 (-) |
| G1143449 | NA | other | downstream | 515810 | 11281062 ~ 11282092 (-) |
| G1143380 | NA | other | downstream | 638641 | 11157886 ~ 11159261 (-) |
| LOC110494931 | cacna1a | other | downstream | 975535 | 10780341 ~ 10913542 (-) |
| G1143743 | NA | other | upstream | 140332 | 11951595 ~ 11952568 (-) |
| G1143771 | NA | other | upstream | 231845 | 12043108 ~ 12081882 (-) |
| G1144335 | LOC106564512 | other | upstream | 803713 | 12614976 ~ 12615559 (-) |
| G1144338 | NA | other | upstream | 806696 | 12617959 ~ 12618158 (-) |
