LOC110485534 (LOC106564462)


Basic Information

Item Value
gene id LOC110485534
gene name LOC106564462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11873981 ~ 11875822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940208.1
tacacagagagagatattcagCGTCTTCTCTATCTGTTGTGTACTCACCCACTCCGTCACCACCCACTTACACCATTCACAATCCTCAACCATTTTAGGATCTCTGCAGTGCTGCTATGGGGTCTAACAGAATCAAAAACAGCATTCCTGTCCCTCCACTCTTCCATAACCCTACAAACACCAGCCCCAGACACACAGTCTATGTGTATCCAGTACAATGTCTTCAGCACAGCTAGGATTGGAATGATTGGGTATAAGGCCTTTAAAACGCCATATTAACGTAAACCGGATTATTGAATGAAATGAAATTGTTACCACTTGTGGACTAAACAGTATTGTCTGTCCTTTACCATGTTTCTAGTCACTAAGACCTTAATGCCTCAACCAGGCTACAGTGGCCTCAGAGTAGGGCAATTACAATCAGAGTTTCTGGTTTAGGAATGTGTGGGGAGAgtgtgtctggtctggtggtGGTGCATCATAAAGACTGTAGCAGCATAGCTGGACAACTCCTACAGCTCTGgtatagatacattacattacctGAACAACTTGAATAGACACGGCTAACTACTCTGTCTGAAGATTACGTAGTCATTCTGAATGACCCATACATGCATCAGTACAGACGTTGGTTGATATGAAACTGATACAACTTTCAACTGAACAATGGGAACAGTGAAACATTTGCTACTTTGGGTACAGAGAGTGATGACCAGCCGGTTCAGCCAGTTCAAGGCTGGATTGGTCACGAGTTGAGGCTTCTGAGAATGTTGTGTCCTGTGTCATCTGGGTCTTCGTCAGGCATCCGGCTGGCCGGGCTGTCCCCCACAGCCACAGCGAAAGAGGACACCCAAACAGTCTCTCCGACTGCTAAGAAAAATGGCctaccttctttctctctccttcttcctcctcttcctagGACTCACACAGGCCCACCCTCTCCAGCTTGATGAGATGGTCTTCACAGAAGACCCAGATGATCTGGTGGACATCACCACCAGGATCCTGGAGACCAACAATGGCACCACAGAGATGCTGATGGAAGGAGACGTCATGGTCCCCAGAACCAGGACTGCCATCAGGTGCTTGTGGTCCAACAAATGTCTCTGGGAGAGGAAGAAGTCAGAGAACCTCGTCAAGGTTCCTTACACGCTCAGCTCAGATTTTGACTCTTATTCCCAGGGGAAGATCAAGTACGCCATGAACACCTTCCACACCAAGACCTGCTTGCGCTTCGTCCAACGTAGCAACCAGAGGGACTACCTTAGCATCGAAAGCAGATCCGGCTGTTCTTCATGGGTTGGAAAAACCGGAGGTAAGCAGCTCGTATCCCTCGAAAAAGGAGGGTGTGTTTACCACGGTACCATCCAGCACGAGCTGCTCCACGCTCTGGGTTTCTACCACGAACAGAACAGGAGTGACCGCGACAAGTACATCCGGATCAACTGGGAGTATGTTGAACGTGGGGAGGAGCCCAACTTCGACAAAGAGGACACCAACAACCTGGACATTCCCTATGACTACTCCTCCGTCATGCATTATAATAGATGGTCGTTCAGCACTGTGTATAGGAAGGAGACGATCACTCCTATTCCTGACGCCACTGTGCCCATCGGACAGAGCTTGGAGATGTCTGCGATCGACGTTCAGAGGGTTAACAAGCTCTACAGGTGTTAAAGGGAGGGAAAAGTTGGAGCTGAATCTGATGTCTGAATTTGATGTCTGATTCTGATGTCTGAATCTGATGTCTGAATCTGATGTCTGAATCTGATGTCTGAATTTGATGTCTGAATCTGATGTCTGAATCTGATGTCTGAATCTGATGTCTGAATCTGA

Function

NR:

description
high choriolytic enzyme 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940208.1 True 1842 mRNA 0.48 1 11873981 11875822

Neighbor

gene id symbol gene type direction distance location
LOC110485539 cxcl12b coding downstream 62718 11797902 ~ 11811263 (-)
LOC118938530 NA coding downstream 136905 11736364 ~ 11737076 (-)
LOC110485542 LOC106564456 coding downstream 141532 11723726 ~ 11732449 (-)
LOC110485529 LOC106589785 coding downstream 151875 11713458 ~ 11722106 (-)
LOC110485537 mcrip2 coding downstream 161646 11706574 ~ 11712341 (-)
LOC110487235 xpnpep1 coding upstream 16351 11892173 ~ 11905783 (-)
LOC110485617 LOC106590349 coding upstream 31080 11906902 ~ 11938426 (-)
LOC110485629 NA coding upstream 483031 12358008 ~ 12366285 (-)
LOC110487266 NA coding upstream 540195 12416017 ~ 12448563 (-)
LOC110485637 LOC106590256 coding upstream 835862 12711684 ~ 12720418 (-)
G1143688 NA non-coding downstream 35466 11837392 ~ 11838515 (-)
G1143682 NA non-coding downstream 41576 11831745 ~ 11832405 (-)
G1143657 NA non-coding downstream 100441 11773047 ~ 11773540 (-)
G1143652 NA non-coding downstream 111649 11759602 ~ 11762332 (-)
G1143643 NA non-coding downstream 124728 11746462 ~ 11749253 (-)
G1143729 NA non-coding upstream 57260 11933082 ~ 11933581 (-)
G1143767 NA non-coding upstream 121100 11996922 ~ 11998113 (-)
G1143785 NA non-coding upstream 145308 12021130 ~ 12032311 (-)
G1143791 NA non-coding upstream 153287 12029109 ~ 12030164 (-)
G1143799 NA non-coding upstream 170484 12046306 ~ 12047107 (-)
LOC118938427 LOC106564452 other downstream 379641 11447021 ~ 11494371 (-)
LOC110485554 LOC106590435 other downstream 444616 11425756 ~ 11429422 (-)
G1143449 NA other downstream 591889 11281062 ~ 11282092 (-)
G1143380 NA other downstream 714720 11157886 ~ 11159261 (-)
G1143743 NA other upstream 75773 11951595 ~ 11952568 (-)
G1143771 NA other upstream 167286 12043108 ~ 12081882 (-)
G1144335 LOC106564512 other upstream 739154 12614976 ~ 12615559 (-)
G1144338 NA other upstream 742137 12617959 ~ 12618158 (-)

Expression


Co-expression Network